View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11220_high_3 (Length: 620)
Name: NF11220_high_3
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 607
Target Start/End: Complemental strand, 27989103 - 27988520
Alignment:
| Q |
20 |
cggtcaagactctgacagaaagttttcatgtatcactgccgactgtggctccggcaaagtagcctgcgccggaggtggtgccaaacctccggcaacatta |
119 |
Q |
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| T |
27989103 |
cggtcaagactctgacagaaagttttcatgtatcactgccgactgtggctccggcaaagtagcctgcgccggaggtggtgccaaacctccggcaacatta |
27989004 |
T |
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| Q |
120 |
gcagagttcaccttgaacggagctgatgggctggacttctacgacgtgagtttggttgacggtaagtgtgtttggtgtcttaacacatgtcagtgtcatt |
219 |
Q |
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| T |
27989003 |
gcagagttcaccttgaacggagctgatgggctggacttctacgacgtgagtttggttgacggtaagtgtgtttggtgtcttaacacatgtcagtgtcatt |
27988904 |
T |
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| Q |
220 |
gaattgtaatttgtatctatataagcacggattaggcatgtctggtgtcatatacttgtggtgtccgacaccgacacactgacacatgtgattacgttga |
319 |
Q |
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| T |
27988903 |
gaattgtaatttgtat--atataagtacggattaggcatgtctggtgtcatatacttgtggtgtccgacaccgacacact--cacatgtgattacattga |
27988808 |
T |
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| Q |
320 |
attattattggtataaaggtttcacctttcttcaaattggatgaaatagtcaagttattgttcattagctatataatcatcttactttgagtattactta |
419 |
Q |
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| T |
27988807 |
attattattggtataaaggtttcacctttcttcaaattggatgaaatagtcaagttattgttcattagctatataatcatcttactttgagtattactta |
27988708 |
T |
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| Q |
420 |
caatagtcaaatgaactatagtaagactttgccatcaagttaactaaggttagataactcattgcccattggtcaacaaactgcattactaggattccca |
519 |
Q |
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| T |
27988707 |
caatagtcaaatgaactatagtaagactttgccatcaagttaactaaggttagataactcattgcccattggtcaacaaactgcattactaggattccca |
27988608 |
T |
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| Q |
520 |
acataagctccatcagagttacatttgattcaattggaaactggaggattctatagggcttctatgatgatttgaggttttgatgtcc |
607 |
Q |
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| T |
27988607 |
acataagctccatcagagttacatttgattcaattggaaactggaggattctatagggcttctatgatgatttgaggttttggtgtcc |
27988520 |
T |
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