View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11220_low_10 (Length: 388)
Name: NF11220_low_10
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 59 - 388
Target Start/End: Original strand, 84667 - 85002
Alignment:
| Q |
59 |
tatggtatgaagtaaaatgaaattgaagaaggaagaaataggtacagtacctggatgagtttaaattggtagaatcggagacgaaagaggatgttgttg- |
157 |
Q |
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| T |
84667 |
tatggtatgaagtaaaatgaaattgaagaaggaagaaataggtacagtacctggatgagtttaaattggtagaatcggagacgaaagaggatgttgttgt |
84766 |
T |
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| Q |
158 |
-----aagaagatgatgatgaggcggagaagaataagaatttgttaatacgcttcttcttcaaaagtacaagaagaagtnnnnnnnnnnnnnnnnnngag |
252 |
Q |
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| T |
84767 |
tgttgaagaagatgatgatgaggcggagaagaataagaatttgttaatacgcttcttcttcaaaagtacaagaagaagtacaacaacaacaacaacagag |
84866 |
T |
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| Q |
253 |
atgattacaattaccgaactgccatagatgttctttgatatcatcatcatctttcctatcctacccctcctccacacaacgaatctctcttttatatatt |
352 |
Q |
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| T |
84867 |
atgattacaattaccgaactgccatagatgttctttgatatcatcatcatctttcctatcctacccctcctccacacaacgaatctctctttaatatatt |
84966 |
T |
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| Q |
353 |
cactctcacacaccacaaacctatcttgtgatactc |
388 |
Q |
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| T |
84967 |
cagtctcacacaccacaaacctatcttgtgatactc |
85002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 84612 - 84641
Alignment:
| Q |
15 |
ctaattccattccagtgaaactaatttcac |
44 |
Q |
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| T |
84612 |
ctaattccattccagtgaaactaatttcac |
84641 |
T |
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