View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11220_low_11 (Length: 381)
Name: NF11220_low_11
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_low_11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 42071872 - 42071509
Alignment:
| Q |
18 |
accgataataataaattgagaaaattgattaattgaatgtaaccatatgttccatttgaacattagacatgtatgtctttgatccgaagtgtttgttgtt |
117 |
Q |
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| T |
42071872 |
accgataataataaattgagaaaattgattaattgaatgtaaccatatgttccatttgaacattagacatgtatgtctttgatccgaagtgttcgttgtt |
42071773 |
T |
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| Q |
118 |
atatgaattcagatatctagactgatatgtacaaactaatctctcgagatactagcatctattttaggttttaacatttttcaacatatattcttacata |
217 |
Q |
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| T |
42071772 |
gtatgaattcagatatctagactgatatgtacaaactaatctctcgagatactaacatctattttaggttttaacatttttcaacatatattcttccata |
42071673 |
T |
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| Q |
218 |
gacacaattttgatgagcctacgtgattttgacaaaagctatattttgaaactgtgattttgtcaaattcaccatttattcaaacatctaatcataaaga |
317 |
Q |
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| T |
42071672 |
gacacaattttgatgagcctacgtgattttgacaaaagctatattttgaaactgtgattttgtcaaattcaccgtttattcaaacatctaatcataaaga |
42071573 |
T |
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| Q |
318 |
aactagtgacatattgacatatttaatcattcaaaaaccgtttgaaagttattatatcaatcaa |
381 |
Q |
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| T |
42071572 |
aactaatgacatattgacatatttaatcattcaaaaaccgtgtgaaagttattatatcaatcaa |
42071509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 42055589 - 42055473
Alignment:
| Q |
103 |
gaagtgtttgttgttatatgaattcagatatctagactgatatgtacaaactaa--tctctcgagatactagcatctattttaggttttaacatttttca |
200 |
Q |
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| T |
42055589 |
gaagtgtttattgttaggtgaattcagatatctatgccggtatgcaaagactaatctctctcgagatactaacatctatttgaggggttaacatttttca |
42055490 |
T |
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| Q |
201 |
acatatattcttacata |
217 |
Q |
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| T |
42055489 |
acaaatgttcttacata |
42055473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 42080768 - 42080614
Alignment:
| Q |
22 |
ataataataaattgagaaaattgattaattgaatgtaaccatatgttccatttgaacattagacatgtatgtctttgatccgaagtgtttgttgttatat |
121 |
Q |
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| T |
42080768 |
ataatagtatattgagaaaattgaaaaattgaatgtaaccatatgtgccatttaaatataaaac----atgccttcgatatgaagtgtctattgttagat |
42080673 |
T |
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| Q |
122 |
gaattcagatatctagactgatatgtacaaactaatctctcgagatactagcatctatt |
180 |
Q |
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| T |
42080672 |
gaattcagatacctaaaccgatatgcaaagaccaatcatacgagatactaacatctatt |
42080614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 9483390 - 9483433
Alignment:
| Q |
24 |
aataataaattgagaaaattgattaattgaatgtaaccatatgt |
67 |
Q |
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| T |
9483390 |
aataataatttgagaaaatagaataattgaatgtaaccatatgt |
9483433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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