View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11220_low_12 (Length: 326)

Name: NF11220_low_12
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11220_low_12
NF11220_low_12
[»] chr5 (9 HSPs)
chr5 (12-308)||(1044071-1044367)
chr5 (12-308)||(1033684-1033980)
chr5 (12-308)||(1065686-1065982)
chr5 (12-308)||(1071413-1071709)
chr5 (19-235)||(1640649-1640865)
chr5 (12-308)||(1058594-1058890)
chr5 (12-235)||(1053329-1053552)
chr5 (12-196)||(1046654-1046838)
chr5 (274-308)||(1046919-1046953)
[»] chr3 (3 HSPs)
chr3 (12-113)||(44171262-44171363)
chr3 (12-113)||(44191558-44191659)
chr3 (39-123)||(54102841-54102925)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 1044071 - 1044367
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044071 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctttggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 1044170  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 211  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044171 gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 1044270  T
Q  212 ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttc 308  Q
    |||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1044271 ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttc 1044367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 1033684 - 1033980
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |  ||||||||||||| || ||||||||||||||||||||||| | |||||||||||    
T  1033684 acagatgaatatggtggatcccttgagaatcgttgtcgatttgcattggaagttgttgacgctgttgtgaatgagataggagcagaaagagttggaatta 1033783  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 211  Q
    || ||||||||||||| ||| || |||||  || ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1033784 gattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcaataagtacaatattcttta 1033883  T
Q  212 ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  1033884 ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttc 1033980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 1065686 - 1065982
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| ||||| || || ||||| || ||||||||| || |||||||||||||||| ||||  ||||||||||||||||| | ||||||||| |    
T  1065686 acagatgaatatggtgggtctctggagaaccgctgtcgatttgctttggaagttgttgaagctgttgcaaatgagataggagcagaaagagttggaataa 1065785  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 211  Q
    || ||||||||||||| || ||||||||| ||  ||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||   |||||||||    
T  1065786 gattatcaccttttgcggagtatgcagaatgtggagactccaaccccaatgaattgggactttatatggtcaatgccctcaataaatatggtattcttta 1065885  T
Q  212 ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttc 308  Q
    |||||| ||||||||||||||||| ||| |   || |||||  | |||| ||||  |||| || ||||||||||||||||| ||||| |||||||||    
T  1065886 ctgtcatatggtggaaccaagaatgaaaactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttc 1065982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 1071413 - 1071709
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    |||||||| || ||||||||||| ||||| |||||||| ||| || |||||||||||||||| ||||  |||||||||||| |||| | ||||||||| |    
T  1071413 acagatgagtatggtggatcccttgagaaccgttgtcggtttgctttggaagttgttgaagctgttgcaaatgagataggaacagaaagagttggaataa 1071512  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 211  Q
    || |||||||||||||||| ||| ||||| ||  ||||||||| || || |||||||||||| |||||||||||||||||||||| |||  |||||||||    
T  1071513 gattatcaccttttgcagagtattcagaatgtggagactccaaccctaaagaattgggactttatatggttaatgccctcaataaatacggtattcttta 1071612  T
Q  212 ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttc 308  Q
     ||||||||||||||||||||||| | | |   || |||||  | |||| ||||  |||| || ||||||||||||||||| ||||| |||||||||    
T  1071613 ttgtcacatggtggaaccaagaatgataactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttc 1071709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 1640865 - 1640649
Alignment:
Q  19 aatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatc 118  Q
    ||||||||||| |||| || || |||||||||||  || ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||| ||||    
T  1640865 aatacggtggaacccttgaaaaccgttgtcgattcgctttggaaattgttgaagcagttgtgaatgagataggtgcagaaagagttggaattagattatc 1640766  T
Q  119 accttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcac 218  Q
     ||||| |||||||||| |||| ||  ||||||||||||  | |||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||    
T  1640765 gcctttcgcagaatatggagaatgtggagactccaatcctgaagaattggggctttatatggttaatgccctcagtaaatacaatattctttactgtcac 1640666  T
Q  219 atggtggaaccaagaat 235  Q
    |||||||||||||||||    
T  1640665 atggtggaaccaagaat 1640649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 1058594 - 1058890
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| ||||||||||| ||||| ||||||||  ||  | |||||||||||||||| ||||  ||||||||||| ||||||| |  ||||||||    
T  1058594 acagatgaatatggtggatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaatta 1058693  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 211  Q
    || ||||||||||| |||||||||||||| ||  |||||| |||||||  |||||||||||| |||||| ||||||||||||||| ||   |||||||||    
T  1058694 gattatcacctttttcagaatatgcagaatgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggtattcttta 1058793  T
Q  212 ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttc 308  Q
    ||||||  |||||||||||||||| ||| |   | ||||||  |||||| || || |||| || ||||| ||||||||||| ||||| |||||||||    
T  1058794 ctgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttc 1058890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 1053329 - 1053552
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| |||||| |||| || ||||||||| |||||  | ||||| |||||||||| ||||  ||||||||||| ||||| | ||||||||| |    
T  1053329 acagatgaatatggtggaacccttgaaaatcgttgtagatttgttttggaaattgttgaagctgttgcaaatgagataggtgcagaaagagttggaataa 1053428  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta 211  Q
     | |||||||||||| | ||| || |||  ||  |||||| |||||| | |||||||||||| ||||||| |||||||||||||| ||   |||||||||    
T  1053429 aattatcaccttttgaaaaatttggagattgtggagactcaaatccccaagaattgggactttatatggtgaatgccctcaataaatatggtattcttta 1053528  T
Q  212 ctgtcacatggtggaaccaagaat 235  Q
     ||||| |||||||||||||||||    
T  1053529 ttgtcatatggtggaaccaagaat 1053552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 1046654 - 1046838
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| |||||| | || || || ||||||  ||||  | ||||| |||||||||| ||||| |||||||| || || || | ||||||||| |    
T  1046654 acagatgaatatggtggaactcttgaaaaccgttgtaaatttgttttggaaattgttgaagctgttgtaaatgagattggtgccgaaagagttggaataa 1046753  T
Q  112 gactatcaccttttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataa 196  Q
     ||||||||||||| |||| |  | |||| ||  |||||| ||||| || | |||||| ||| | ||||||||||||||||||||    
T  1046754 aactatcacctttttcagatttcgaagaatgtggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataa 1046838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 1046919 - 1046953
Alignment:
Q  274 tggtgccaatgagaaaggctttcaatggcactttc 308  Q
    |||||||| ||||||||||||||||||||||||||    
T  1046919 tggtgccagtgagaaaggctttcaatggcactttc 1046953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 44171363 - 44171262
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| ||||||||||| ||||| || ||| | |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44171363 acagatgaatatggtggatccctagagaaccgatgttggtttggattggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaatta 44171264  T
Q  112 ga 113  Q
    ||    
T  44171263 ga 44171262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 44191659 - 44191558
Alignment:
Q  12 acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta 111  Q
    ||||||||||| ||||||||||| ||||| || ||| | |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44191659 acagatgaatatggtggatccctagagaaccgatgttggtttggattggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaatta 44191560  T
Q  112 ga 113  Q
    ||    
T  44191559 ga 44191558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 54102925 - 54102841
Alignment:
Q  39 aatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt 123  Q
    ||||||||||| || ||||| || |||||  ||||||||||  ||||||| ||||| || ||||||||  ||||||| |||||||    
T  54102925 aatcgttgtcgcttccctctagaggttgtgaaagcagttgttgatgagattggagctgacaaagttggtgttagactttcacctt 54102841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University