View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11220_low_14 (Length: 296)

Name: NF11220_low_14
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11220_low_14
NF11220_low_14
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-280)||(27909-28188)


Alignment Details
Target: scaffold0148 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 27909 - 28188
Alignment:
Q  1 gtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttcttggctgcttccatataactgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27909 gtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttcttggctgcttccatataactag 28008  T
Q  101 caaatcatcttccacccactgtatcacacctgtcgaattgaggaacaatcttttattgttatactgttcgttacgaattactgatctgttccgtttttca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28009 caaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgttcgttacgaattactgatctgttccgtttttca 28108  T
Q  201 ggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatgtc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28109 ggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatgtc 28188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University