View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11220_low_18 (Length: 241)
Name: NF11220_low_18
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42071459 - 42071234
Alignment:
| Q |
1 |
ttactccaaaacaaaattatttagttcttaaacttattatataagtttnnnnnnnn-taaaattgacccactcnnnnnnnttactctaacttcaccattg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
42071459 |
ttactccaaaacaaaattatttagttcttaaacttattatataagtttaaaaaaaaataaaattggcccactcaaaaaaattactctaacttcaccattg |
42071360 |
T |
|
| Q |
100 |
tatttacaaatcctattccttatagaatgataacaataattnnnnnnnnnnctttactagaattaataatgagagaagtaaagggtaacctgcaatggga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42071359 |
tatttacaaatcctattccttatagaatgataacaataattaaaaaaaaaactttactagaattaataatgagagaagtaaagggtaacctgcaatggga |
42071260 |
T |
|
| Q |
200 |
agtttggattcatcatgatccttagt |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42071259 |
agtttggattcatcatgatccttagt |
42071234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 42079513 - 42079460
Alignment:
| Q |
172 |
gagaagtaaagggtaacctgcaatgggaagtttggattcatcatgatccttagt |
225 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
42079513 |
gagaagtaaagggtaacctgcaatggcaagtttggattgatcatgatccttagt |
42079460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 42055113 - 42055080
Alignment:
| Q |
183 |
ggtaacctgcaatgggaagtttggattcatcatg |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
42055113 |
ggtaacctgcaatggcaagtttggattcatcatg |
42055080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University