View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11220_low_4 (Length: 567)

Name: NF11220_low_4
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11220_low_4
NF11220_low_4
[»] chr6 (6 HSPs)
chr6 (1-553)||(13855276-13855828)
chr6 (12-220)||(13849497-13849706)
chr6 (360-553)||(13851773-13851965)
chr6 (307-361)||(33303630-33303684)
chr6 (311-360)||(13851711-13851760)
chr6 (329-361)||(9195788-9195820)
[»] chr1 (2 HSPs)
chr1 (307-360)||(34298407-34298460)
chr1 (312-360)||(10572624-10572672)
[»] chr8 (1 HSPs)
chr8 (360-416)||(34897122-34897178)
[»] chr7 (4 HSPs)
chr7 (358-409)||(38143258-38143309)
chr7 (323-361)||(927871-927909)
chr7 (312-360)||(27945017-27945065)
chr7 (317-361)||(30516391-30516435)
[»] chr5 (1 HSPs)
chr5 (311-360)||(22423847-22423896)
[»] chr4 (2 HSPs)
chr4 (323-360)||(43061708-43061745)
chr4 (312-360)||(22440635-22440683)
[»] chr3 (2 HSPs)
chr3 (307-360)||(12674536-12674589)
chr3 (325-361)||(35335590-35335626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (312-352)||(8642-8682)
[»] chr2 (1 HSPs)
chr2 (325-361)||(37497109-37497145)


Alignment Details
Target: chr6 (Bit Score: 525; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 13855276 - 13855828
Alignment:
Q  1 atgtgttgcttgagaaaccggtggcggttagtgtggaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855276 atgtgttgcttgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactat 13855375  T
Q  101 gtggatgcatcatccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855376 gtggatgcatcatccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttga 13855475  T
Q  201 taatgttgatgtatgaattactgacatgacacgataaggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatatagaca 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855476 taatgttgatgtatgaattactgacatgacacgatagggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatatagaca 13855575  T
Q  301 cccgttaccaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatgtaattatatgtgtcgatgtccgacacacgtaacccgagg 400  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13855576 cccgttactaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatgtaattatatgtgtcgatgtccgacacacctaacccgagg 13855675  T
Q  401 agtgttcgtacttcattgttacttaactataagctagatccaaaatttagaaccaaaacagaaagttatgctattgatgttagtctgtcatggtcccttg 500  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13855676 agtgttcgtacttcatagttacttaactataagctagatccaaaatttagaaccaaaacagaaagttatgccattgatgttagtctgtcatggtcccttg 13855775  T
Q  501 cccttatgtaaatttgaacaattttaaagttgttgtaaatatgtgtgtatatt 553  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13855776 cccttatgtaaatttgaacaattttaaagttgttgtatatatgtgtgtatatt 13855828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 13849497 - 13849706
Alignment:
Q  12 gagaaaccggtggcggttagtgtggaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatc 111  Q
    ||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13849497 gagaagccggtggctgtgagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatc 13849596  T
Q  112 atccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgtttt-gttttgataatgttgat 210  Q
    |||| ||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  13849597 atcctagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaatcggtatgtgtttgtgttttggttttgataatgttgat 13849696  T
Q  211 gtatgaatta 220  Q
    ||||||||||    
T  13849697 gtatgaatta 13849706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 360 - 553
Target Start/End: Original strand, 13851773 - 13851965
Alignment:
Q  360 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttagaaccaaaac 459  Q
    |||||||||||||||||||||| ||||| | ||||| ||||| |||   | |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  13851773 tgtaattatatgtgtcgatgtctgacacgcctaacctgaggaatgtctatgcttcatagttacttaactataagctagatccaaaattaagaaccaaaac 13851872  T
Q  460 agaaagttatgctattgatgttagtctgtcatggtcccttgcccttatgtaaatttgaacaattttaaagttgttgtaaatatgtgtgtatatt 553  Q
    ||||||||||||  ||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  13851873 agaaagttatgcctttgatgttagtctatcggggtcccttgcccttatgtaaatttgaa-aattttaaagttgttgtatatatgtgtgtatatt 13851965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 33303630 - 33303684
Alignment:
Q  307 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatg 361  Q
    |||| |||||| | ||| |||||||||||||||||| ||||||||||| ||||||    
T  33303630 accagacacgatacggacactgacacatcgacactaataataatttgaaaaaatg 33303684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 13851711 - 13851760
Alignment:
Q  311 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    ||||||||| ||| |||||||| |||||||  ||||||||||||||||||    
T  13851711 aacacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 9195820 - 9195788
Alignment:
Q  329 acacatcgacactactaataatttgagaaaatg 361  Q
    ||||||||||||| |||||||||||||||||||    
T  9195820 acacatcgacactcctaataatttgagaaaatg 9195788  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 34298407 - 34298460
Alignment:
Q  307 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    |||| |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  34298407 accagacacgacacggaaactgacacaccgacaccactaataatttgagaaaat 34298460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 10572672 - 10572624
Alignment:
Q  312 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    |||||||||| | ||||||||  |||||| |||||||||||||||||||    
T  10572672 acacgacatgaacactgacacgccgacaccactaataatttgagaaaat 10572624  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 34897122 - 34897178
Alignment:
Q  360 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcat 416  Q
    |||||||||||||||||||||| |||||| ||||  |||||||||| ||| ||||||    
T  34897122 tgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcat 34897178  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 38143258 - 38143309
Alignment:
Q  358 aatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgt 409  Q
    ||||||||||||||||| | |||| ||||||| ||| |||||||||||||||    
T  38143258 aatgtaattatatgtgttggtgtcagacacacctaatccgaggagtgttcgt 38143309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 361
Target Start/End: Complemental strand, 927909 - 927871
Alignment:
Q  323 aaactgacacatcgacactactaataatttgagaaaatg 361  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  927909 aaactgacacgtcgacactaataataatttgagaaaatg 927871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 27945017 - 27945065
Alignment:
Q  312 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    |||||||| ||| ||||||||  |||||| |||||||||||||||||||    
T  27945017 acacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 30516435 - 30516391
Alignment:
Q  317 acatggaaactgacacatcgacactactaataatttgagaaaatg 361  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||    
T  30516435 acatggacactgacacgtcgacactaacaataatttgagaaaatg 30516391  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 22423896 - 22423847
Alignment:
Q  311 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||||||||    
T  22423896 aacacgacacggatactgacaccctgacactactaataatttgagaaaat 22423847  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 43061745 - 43061708
Alignment:
Q  323 aaactgacacatcgacactactaataatttgagaaaat 360  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43061745 aaactgaaacatcgacactagtaataatttgagaaaat 43061708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 22440683 - 22440635
Alignment:
Q  312 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    |||||||||||| ||||| ||||||||||   |||||||||||||||||    
T  22440683 acacgacatggacactgatacatcgacaccgttaataatttgagaaaat 22440635  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 12674589 - 12674536
Alignment:
Q  307 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 360  Q
    |||| |||||||| ||| | ||||||| ||||||| ||||||||||||||||||    
T  12674589 accagacacgacacggacattgacacaccgacactgctaataatttgagaaaat 12674536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 35335590 - 35335626
Alignment:
Q  325 actgacacatcgacactactaataatttgagaaaatg 361  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35335590 actgacacatagacactagtaataatttgagaaaatg 35335626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 8642 - 8682
Alignment:
Q  312 acacgacatggaaactgacacatcgacactactaataattt 352  Q
    |||||||||||| |||||||| |||||||| ||||||||||    
T  8642 acacgacatggacactgacacgtcgacacttctaataattt 8682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 37497109 - 37497145
Alignment:
Q  325 actgacacatcgacactactaataatttgagaaaatg 361  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37497109 actgacacatcgacactgataataatttgagaaaatg 37497145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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