View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11220_low_6 (Length: 477)

Name: NF11220_low_6
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11220_low_6
NF11220_low_6
[»] chr7 (1 HSPs)
chr7 (19-462)||(44111963-44112408)
[»] chr3 (3 HSPs)
chr3 (179-458)||(38896494-38896773)
chr3 (24-86)||(38896854-38896916)
chr3 (172-260)||(36153989-36154077)
[»] chr2 (2 HSPs)
chr2 (179-458)||(24324482-24324761)
chr2 (26-86)||(24324326-24324386)
[»] scaffold0631 (1 HSPs)
scaffold0631 (179-458)||(7321-7600)
[»] chr4 (1 HSPs)
chr4 (178-451)||(13102706-13102979)
[»] chr8 (1 HSPs)
chr8 (199-451)||(16797267-16797519)
[»] chr1 (3 HSPs)
chr1 (196-348)||(19256485-19256637)
chr1 (178-260)||(47723007-47723089)
chr1 (178-260)||(47729999-47730081)
[»] chr6 (1 HSPs)
chr6 (382-446)||(2269460-2269524)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 44111963 - 44112408
Alignment:
Q  19 agaggaggataaatgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtgtgttggccatttatatattcattgcatgannn 118  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||       
T  44111963 agaggaggataaatgagctttgtttgaaataccacacttacatggtcgaaatggacgttgactatgtgtgttagccatttatttattcattgcatgattt 44112062  T
Q  119 nnnn--atttctcatgttggatttaattgtgtgcatatatgaattacaacatctttttactcagggtgcagttatgcttccaatgatgttctcgcatgac 216  Q
          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112063 ttttttatttcacatgttggatttaattgtgtgcatatatgaattacaacatctttttactcagggtgcagttatgcttccaatgatgttctcgcatgac 44112162  T
Q  217 tttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgacta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44112163 tttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatttgagatattagtagagaggaacaaccagggaatttatctgacta 44112262  T
Q  317 tgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaa 416  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112263 tgggatgacatgctttccgtgatttctacaagttagcgcttggtgcttggattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaa 44112362  T
Q  417 taggtttggaaagaggattcgctacccaacttttactccacctatg 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44112363 taggtttggaaagaggattcgctacccaacttttactccacctatg 44112408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 179 - 458
Target Start/End: Complemental strand, 38896773 - 38896494
Alignment:
Q  179 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagat 278  Q
    |||||||| | |||||||| |||||||| ||| |||| |||| |||||| || || |||| |||| |  ||||||||||||| ||||||||||  ||  |    
T  38896773 agggtgcaataatgcttcctatgatgttttcgaatgattttggagaccaaatacagcaatgtgcagctctggtggatccaaacaacaatcaattcgaagt 38896674  T
Q  279 attagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtt 378  Q
     || || ||||| ||||| ||||| ||||||||||||  | | || || ||| | |||||||| |||||||||   ||||||||||| ||||| |||||     
T  38896673 cttggtggagagaaacaatcaggggatttatctgacttggggctggcacgctatgcgtgatttttacaagttacatcttggtgcttggattacaattgtc 38896574  T
Q  379 tggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacc 458  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| |||||    
T  38896573 tggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccacc 38896494  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 38896916 - 38896854
Alignment:
Q  24 aggataaatgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtg 86  Q
    ||||| ||||| |||||||||||||||||||| || ||||| || ||||||||||| ||||||    
T  38896916 aggatgaatgaccttcgtttgaaataccgcacctatatggttgagatggacgttgattatgtg 38896854  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 36153989 - 36154077
Alignment:
Q  172 tttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 260  Q
    ||||| ||||||||  ||||||| ||||||||||| || ||||| |||| |||||||||||| ||||| || ||  |||| ||||||||    
T  36153989 tttacacagggtgctattatgctgccaatgatgttttcccatgattttggagaccagatccatcaatacgctactctggtagatccaaa 36154077  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 179 - 458
Target Start/End: Original strand, 24324482 - 24324761
Alignment:
Q  179 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagat 278  Q
    |||||||| | ||| |||| |||||||| ||| |||| |||| ||||||||| || |||| ||||||  ||||||||||||| ||||||||||  ||  |    
T  24324482 agggtgcaataatgattcctatgatgttttcgaatgattttggagaccagatgcagcaatgtgcaactctggtggatccaaacaacaatcaattcgaagt 24324581  T
Q  279 attagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtt 378  Q
      | || ||||||||||| ||||| |||||||| |||| | | || || ||| | |||||||| |||||||||   ||||||||||| || || |||||     
T  24324582 cctggtggagaggaacaatcaggggatttatctaactaggggttggcacgctatgcgtgatttttacaagttacatcttggtgcttggataacaattgtc 24324681  T
Q  379 tggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacc 458  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| |||||    
T  24324682 tggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccacc 24324761  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 24324326 - 24324386
Alignment:
Q  26 gataaatgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtg 86  Q
    ||||||||| |||||||||||||||||||| || ||||| || ||||||||||| ||||||    
T  24324326 gataaatgaccttcgtttgaaataccgcacctatatggttgagatggacgttgattatgtg 24324386  T

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Target: scaffold0631 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 458
Target Start/End: Complemental strand, 7600 - 7321
Alignment:
Q  179 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagat 278  Q
    |||||||| | ||| |||| |||||||| |||  |||||||| |||||| || || |||| ||||||  ||||||||||||| ||||||||||  ||  |    
T  7600 agggtgcaataatgattcctatgatgttttcgagtgactttggagaccaaatacagcaatgtgcaactctggtggatccaaacaacaatcaattcgaagt 7501  T
Q  279 attagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtt 378  Q
      | || ||||| ||||| ||||| ||||||||||||| | | ||||| | | | |||||||| |||||||||   ||||||||||| ||||  |||||     
T  7500 cctggtggagagaaacaatcaggggatttatctgactaggggctgacacgttatgcgtgatttttacaagttacatcttggtgcttggattaaaattgtc 7401  T
Q  379 tggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacc 458  Q
    ||||||||  ||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| |||||    
T  7400 tggatgggagatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccacc 7321  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 451
Target Start/End: Complemental strand, 13102979 - 13102706
Alignment:
Q  178 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgaga 277  Q
    ||||||||  ||||| | || |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||| ||||||||   |||||| | |||      
T  13102979 cagggtgctattatgttgcctatgatgttttcccatgattttggagaccagatccaacaatatgctactctggttgatccaaaacgcaatcagtttgaag 13102880  T
Q  278 tattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgt 377  Q
    |  | || || ||||| |||||||| |||||| | || | | | ||||| ||| ||||||||||||| ||  |   | ||||| | ||  |||| |||||    
T  13102879 tgctggttgaaaggaataaccaggggatttatttaacaaagggttgacacgctatccgtgatttctataaagtgcagtttggttcctgggttacaattgt 13102780  T
Q  378 ttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta 451  Q
     |  ||||| |||||||||||| |||||||| |||| || |||||||| ||||| ||||| |||||||| ||||    
T  13102779 gtttatgggaaatggaaggtttaatattagaatcaagaacaggtttggtaagagaattcgttacccaaccttta 13102706  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 451
Target Start/End: Original strand, 16797267 - 16797519
Alignment:
Q  199 atgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagatattagtagagaggaacaacc 298  Q
    |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||||||||||||   |||||| | |||  |  | || || ||||| ||||    
T  16797267 atgatgttttcccatgattttggagaccagatccaacaatatgctactctggtggatccaaaatgcaatcagtttgaagtgctggttgaaaggaataacc 16797366  T
Q  299 agggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtt 398  Q
    | || |||||| | || | | | ||||| ||| ||||||||||||||||  |   | ||||| | ||  |||| ||||| |  ||||| |||||||||||    
T  16797367 aagggatttatttaacaaagggctgacacgctatccgtgatttctacaaagtgcagtttggttcctgggttacaattgtgtttatgggaaatggaaggtt 16797466  T
Q  399 tgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta 451  Q
    |||||||||| |||| || | |||||| || || ||||| |||||||| ||||    
T  16797467 tgatattagaatcaagaacatgtttggtaatagaattcgttacccaaccttta 16797519  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 19256637 - 19256485
Alignment:
Q  196 ccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagatattagtagagaggaaca 295  Q
    |||||||||||||| ||||| |||   |||||||| || |||||||||||  |  | || || || ||||||| || |||| |||| || || ||||| |    
T  19256637 ccaatgatgttctcacatgattttagggaccagatacatcaatatgcaacccttattgaccccaacaacaatcgatttgaggtattggtggaaaggaata 19256538  T
Q  296 accagggaatttatctgactatgagatgacatgctttccgtgatttctacaag 348  Q
    || |||||||||||||||||| | | || |||||| | |||||||||||||||    
T  19256537 actagggaatttatctgactaagggttggcatgctattcgtgatttctacaag 19256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 47723007 - 47723089
Alignment:
Q  178 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 260  Q
    ||||||||  ||||| | || |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||||||||||||    
T  47723007 cagggtgctattatgttgcccatgatgttttcccatgattttggagaccagatccaacaatatgctactctggtggatccaaa 47723089  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 47729999 - 47730081
Alignment:
Q  178 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 260  Q
    ||||||||  ||||| | ||||||||||| || ||||| |||| ||||||||||||||||||||| ||  |||| ||||||||    
T  47729999 cagggtgctattatgatgccaatgatgttttcccatgattttggagaccagatccaacaatatgctactctggtagatccaaa 47730081  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 2269524 - 2269460
Alignment:
Q  382 atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaac 446  Q
    ||||| ||||||||||||||||||| | |||| || |||||||| ||||| ||||| ||||||||    
T  2269524 atgggaaatggaaggtttgatattataatcaagaacaggtttggtaagagaattcgttacccaac 2269460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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