View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11220_low_8 (Length: 416)
Name: NF11220_low_8
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 11029417 - 11029823
Alignment:
| Q |
20 |
tatttcatcaaatgtataagtttatggtatgcaatattttctcttaagggttttgcttttttattcataatttcttaaatt------------------- |
100 |
Q |
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| T |
11029417 |
tatttcatcaaatgtataagtttatggtatgcaatattttctcttaagggttttgcttttttattcataatttcttaaattatctgtcttctttgagtgt |
11029516 |
T |
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| Q |
101 |
--gatgatttcaactccatcttaatctgctttttgtttatctatgaattatatgtaaagttgagaaattggtatgctatatattttaattagcttatttg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029517 |
gtgatgatttcaactccatcttaatctgctttttgtttatctatgaattatatgtaaagttgagaaattggtatgctatatattttaattagcttatttt |
11029616 |
T |
|
| Q |
199 |
gctggttttagtcttaaataatgtttctagggtttgatacttatatttgctggttgattactcattataaattcaaaaatgctaaatatagcgaagggaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029617 |
gctggttttagtcttaaataatgtttctagggtttgatacttatatttgctggttgattactcattataaattcaaaaatgctaaatatagcgaagggaa |
11029716 |
T |
|
| Q |
299 |
tgatcccgaatgtaaaacctccctcgttttgcaatgctatcccgttgtaaaaccatagtatttgtaattctaacttataagttatgcccctcaggttttt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11029717 |
tgatcccgaatgtaaaacctccctcgttttgcaatgctatcccgttgtaaaaccattgtatttgtaattctaacttataagttatgcccctcaggttttt |
11029816 |
T |
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| Q |
399 |
tcttcat |
405 |
Q |
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||||||| |
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| T |
11029817 |
tcttcat |
11029823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 1837555 - 1837467
Alignment:
| Q |
156 |
agttgagaaattggtatgctatatattttaattagcttatttggctggttttagtcttaaataatgtttctagggtttgatacttatat |
244 |
Q |
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||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||| ||||||||||| |
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| T |
1837555 |
agttgagaaattggtgtggtatatattttaattagcttattttgctggttttagttttaaataatgtttgtaaggttcgatacttatat |
1837467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 1837638 - 1837579
Alignment:
| Q |
100 |
tgatgatttcaactccatcttaatctgctttttgtttatctatgaattatatgtaaagtt |
159 |
Q |
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| T |
1837638 |
tgatgatttcaactccatcttaatcttctttttgtttatctatgaattatatgtcaagtt |
1837579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 1837740 - 1837668
Alignment:
| Q |
20 |
tatttcatcaaatgtataagtttatggtatgcaatattttctcttaagggttttgcttttttattcataattt |
92 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||| |
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| T |
1837740 |
tatttcatcaaatgtataagtttatggtatgcaatttttgtcctttcgggttttgcttttttattcgtaattt |
1837668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 1836896 - 1836848
Alignment:
| Q |
357 |
tatttgtaattctaacttataagttatgcccctcaggttttttcttcat |
405 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
1836896 |
tatttgtaattctaacttataacttatgcccctcagtttttttcttcat |
1836848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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