View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11220_low_9 (Length: 396)
Name: NF11220_low_9
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 4196365 - 4195985
Alignment:
| Q |
16 |
gacatcaatgtccatttcgttttatcaatggatctagctttcttgatattcatgtacttgaagtaaaaccaaatcaaaccaaagactaacactaaagctg |
115 |
Q |
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| T |
4196365 |
gacatcaatgtccatttcgttttatcaatggatctagctttcttgatattcatgtacttgaagtaaaaccaaatcaaaccaaagactaacactaaagctg |
4196266 |
T |
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| Q |
116 |
caactatgaaaatagttctaagcaaccaaataaaatttttactcttaccctcccctttgacatcacacaaacctttcaaatctccacacaaaccaggatt |
215 |
Q |
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| T |
4196265 |
caactatgaaaatagttctaagcaaccaaacaaaatttttactcttaccctcccctttgacatcacacaaacctttcaaatctccacacaaaccaggatt |
4196166 |
T |
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| Q |
216 |
accaataaaactatccctatacatatccttagccatgagaggtggaatctctccagaaagcatattgtaagacaaattcatctgattgagtttcaagttc |
315 |
Q |
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| T |
4196165 |
accaataaaactatccctatacatatccttagccatgagaggtggaatctctccagaaagcatattgtaagacaaattcatctgattgagtttcaagttc |
4196066 |
T |
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| Q |
316 |
tgcaaactcaccggaacatttccccaaaatcgattattagaaagatcaagaaagttaagcacagacatactcccaatttct |
396 |
Q |
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| T |
4196065 |
tgcaaactcaccggaacatttccccaaaatcgattattagaaagatcaagaaagttaagcacagacatactcccaatttct |
4195985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 392
Target Start/End: Original strand, 34923203 - 34923417
Alignment:
| Q |
178 |
tcacacaaacctttcaaatctccacacaaaccaggattaccaataaaactatccctatacatatccttagccatgagaggtggaatctctccagaaagca |
277 |
Q |
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| T |
34923203 |
tcacacaatcctttcaaatctccacacaaaccaggattcccaaggaaacttaacctatacatttccttagccaattgaggaggtagttctccagaaaaac |
34923302 |
T |
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| Q |
278 |
tattgtaagacaaattcatctgattgagtttcaagttctgcaaactcaccggaacatttccccaaaatcgattattagaaagatcaagaaagttaagcac |
377 |
Q |
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| T |
34923303 |
gattataagacaaattaagctgattaagcttcaaattctgcaacccatgagggattttcccagaaaactgattcctagaaagatcaagaaaattaagcac |
34923402 |
T |
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| Q |
378 |
agacatactcccaat |
392 |
Q |
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| T |
34923403 |
agacaaactcccaat |
34923417 |
T |
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