View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11221_high_2 (Length: 778)
Name: NF11221_high_2
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 359 - 756
Target Start/End: Original strand, 52380556 - 52380959
Alignment:
| Q |
359 |
ctgtgtaatcaacacctaaggagtaacctttgaacccgcatagttactaaacttctatggcgagtttgcttcgtaccaattccttactcacacgctctct |
458 |
Q |
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| T |
52380556 |
ctgtgtaatcaacacctaaggagtaacctttgaacccgcatagttactaaacttctatggcgagtttgcttcgtaccaattccttactcacacgctctct |
52380655 |
T |
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| Q |
459 |
attcgccgctcaggtacactttcgtcccctactgattttgtttttgc------acagtgatcactatcatactaatttatctttctgtgtgtgcagggtg |
552 |
Q |
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| T |
52380656 |
attcgccgctcaggtacgctttcttcccctactgattttgtttttgcagttgcacagtgatcacgatcatactaatttatctttctgtgtgtgcagggtg |
52380755 |
T |
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| Q |
553 |
ttaaactaggactatcttccacttctcagattttgcgcttttcatccaaaggtttgttgaaactctgttactttttgatgaacttgattttgttcaatgg |
652 |
Q |
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| T |
52380756 |
ttaaactaggactatcttccacttctcagattttgcacttttcatccaaaggttcgttttaactctgttactttttgatgaacttgattttgttcaatgg |
52380855 |
T |
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| Q |
653 |
gtttgatgaaaatttattttaagtgatgtgatttatctttagatgtttttgatcttaaagcaagtctaatgtaaaacttgttgtgcatttttcaatgtaa |
752 |
Q |
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| T |
52380856 |
gtttgatgaaaatttattttaagtgatgtgatttatctttagatgtttttgatcttaaagcaagtctaatgtaaaacttggtgtgcatttttcaacgtaa |
52380955 |
T |
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| Q |
753 |
tgcc |
756 |
Q |
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| T |
52380956 |
tgcc |
52380959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 52380220 - 52380322
Alignment:
| Q |
14 |
aagcataggtgggaaaagtaatagcctattaatttgataaaaagtaccgggtacccattagtgaaaatgacaagcccggcccattaagtagtgcagtctt |
113 |
Q |
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| T |
52380220 |
aagcataggtgggaaaagtaatagtctattaatttgataaaaagtaccgggtacccattagtgaaaatgacaagcccggcccattaagtagtgcagtctt |
52380319 |
T |
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| Q |
114 |
ctc |
116 |
Q |
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||| |
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| T |
52380320 |
ctc |
52380322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 52380399 - 52380490
Alignment:
| Q |
202 |
ggagggaaatcaaaccccccgtagaatcataaaccccaatcaatcaatcaatcaatataacacttcttcacttctgacatgcatcaacataa |
293 |
Q |
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| T |
52380399 |
ggagggaaatcaaaccccccgtagaatcataaaccctaatcaatcaatcaatcaatataacacttcttcacttctgacatgcatcaacataa |
52380490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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