View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11221_low_12 (Length: 270)
Name: NF11221_low_12
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 45616341 - 45616176
Alignment:
| Q |
1 |
acacaagattaatacactggaaaataatgaataaaatatacaaaatttatactcaaattcacagaaaagagatgttattcatccatgcaattatgaaagg |
100 |
Q |
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| T |
45616341 |
acacaagattaatacactggaaaataatgaataaaatatacaaaatttatactcaaattcacagaaaagagatgttattcatccatgcaattatgaaagg |
45616242 |
T |
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| Q |
101 |
tactcgataactgcacgtgtattgtatttattaaataatttacagatcatataacaacaatttcag |
166 |
Q |
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| T |
45616241 |
tactcgataactgcacgtgtattttatttattaaataatttacagatcatataacaacaatttcag |
45616176 |
T |
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Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 45616150 - 45616059
Alignment:
| Q |
163 |
tcaggcatatgcaatatcacggaaagcacctcaatacatatgtgccagatatcccctgttttgtttgaatgaggatccaaagccagttctat |
254 |
Q |
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| T |
45616150 |
tcaggcatatgcaatatcacggaaagcacctcaatacatatgtgccagatatcccctgttttgtttgaatgaggatccaaagccagttctat |
45616059 |
T |
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