View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11221_low_14 (Length: 253)
Name: NF11221_low_14
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_14 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23855634 - 23855886
Alignment:
| Q |
1 |
atgtgtgatccatgctagaatttatttaccatgtcactaaatgtaaactttgcttatccagttttattttcctatctatctaactttatttgtgcaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23855634 |
atgtgtgatccatgctagaatttatttaccatgtcactaaatgtaaactttgcttatccggttttattttcctatctatctaactttatttgtgcaatca |
23855733 |
T |
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| Q |
101 |
gtgtatggctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaat |
200 |
Q |
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| T |
23855734 |
gtgtatggctgctgcagtgaaatctctttttatcactgatgagaaagaacgcgagaagagtcgtaaagaattattcgaggctctgcagtttcttgagaat |
23855833 |
T |
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| Q |
201 |
aagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgc |
253 |
Q |
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| T |
23855834 |
aagctgaatgacaagttctttggaggagaagagattggttttgtggatattgc |
23855886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23850723 - 23850972
Alignment:
| Q |
1 |
atgtgtgatccatgctagaatttatttaccatgtcactaaatgtaaactttgcttatccagttttattttcctatctatctaactttatt-tgtgcaatc |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||| || | |||||||| |||||| |||||||| | ||| ||||| |
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| T |
23850723 |
atgtgtgatccatgctagaatttatctaccatgtcactaaatgtgaactttg----tcttgaattattttctaatctatataactttaatctgttcaatc |
23850818 |
T |
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| Q |
100 |
agtgtatggctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaa |
199 |
Q |
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| T |
23850819 |
agtgtacgattgctgcatggaaatctgtttttatgcctgatgagaaagagcgcgagaaggctcgtgaagaattattcgaggctctgcagtttcttgagaa |
23850918 |
T |
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| Q |
200 |
taagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgc |
253 |
Q |
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| T |
23850919 |
tgagctgaaggacaagttctttggaggagaagaaataggctttgtggatattgc |
23850972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 23853171 - 23853363
Alignment:
| Q |
62 |
ttttattttcctatctatctaacttta-tttgtgcaatcagtgtatggctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagag |
160 |
Q |
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| T |
23853171 |
ttttattttccgatctatctaaagttaatttgtgcaatcagtgtgtggctgctgcatggaaatctgtttttataccggatgagaaagagcgcgagaaggc |
23853270 |
T |
|
| Q |
161 |
tcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgc |
253 |
Q |
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| T |
23853271 |
tcgcgaagaattattcgaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaggagattagctttgtggatattgc |
23853363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 23838385 - 23838550
Alignment:
| Q |
88 |
atttgtgcaatcagtgtatggctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgca |
187 |
Q |
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||||||| ||||||||| ||||||||||| || || ||||||| ||||| |||| ||||||||||| | |||||||| |||| ||||||| || |
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| T |
23838385 |
atttgtgaaatcagtgtgtggctgctgcatggatgtcggtttttatgcctgataagaaagaacgcgagaaagctagtgaagaactattgaaggctctaca |
23838484 |
T |
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| Q |
188 |
gtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgc |
253 |
Q |
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| T |
23838485 |
gtttcttgagaatgagttaaaggacaaattctttggaggacaagaaatcggctttgtggatattgc |
23838550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 23860992 - 23860877
Alignment:
| Q |
138 |
gatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattg |
237 |
Q |
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||||||||||| ||| |||||| | |||||||| | ||||||||||||| ||||||||||| ||||||| |||||| |||||| || |||||||| |
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| T |
23860992 |
gatgagaaggagcgccagaagaatgttgaagaatcaaccgaggctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagatta |
23860893 |
T |
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| Q |
238 |
gttttgtggatattgc |
253 |
Q |
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| T |
23860892 |
actttgtggatattgc |
23860877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 23864496 - 23864425
Alignment:
| Q |
180 |
gctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatatt |
251 |
Q |
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||||||||| |||| |||||| ||||||| |||||||||||||| || | ||||||||||||||||||||| |
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| T |
23864496 |
gctctgcagattctcgagaatgagctgaaggacaagttctttgggggagaggagattggttttgtggatatt |
23864425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 23843859 - 23843763
Alignment:
| Q |
137 |
tgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagag |
233 |
Q |
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| T |
23843859 |
tgatgagaaagagcgcgagaagaatattgaagaagcaaccgaggctcttcactttcttgagaatgagctgaaggacaagtactttggaggagaagag |
23843763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 23856911 - 23856835
Alignment:
| Q |
177 |
gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgc |
253 |
Q |
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|||||||| ||| ||||||||||| || |||| ||||||||||||||| | | |||||||| ||||||||||||| |
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| T |
23856911 |
gaggctctacagattcttgagaatgagttgaaggacaagttctttggaggtgaggagattggaattgtggatattgc |
23856835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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