View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11221_low_15 (Length: 243)
Name: NF11221_low_15
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 14174499 - 14174295
Alignment:
| Q |
5 |
gtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttg |
104 |
Q |
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| T |
14174499 |
gtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttg |
14174400 |
T |
|
| Q |
105 |
tagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14174399 |
tagaagtgagtttaatcatcgtaccagtgttaccagttttctcctccatttaatttacactatactctcaagctccaaccggagctctgataccacttgt |
14174300 |
T |
|
| Q |
205 |
tgggc |
209 |
Q |
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||||| |
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| T |
14174299 |
tgggc |
14174295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 28611382 - 28611575
Alignment:
| Q |
8 |
accttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctcca-tttttggcttccaaatggagtagtttgta |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28611382 |
accttatctggctttgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccattttttggcttccaaatggagtagtttgta |
28611481 |
T |
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| Q |
107 |
gaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttg |
206 |
Q |
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| T |
28611482 |
gaagtgagtttaatcatcg---------taccagtgttctcctccatttaatttacactatactctcgagctccaatcggagctctgataccacttgttg |
28611572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 12931228 - 12931033
Alignment:
| Q |
5 |
gtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12931228 |
gtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttg |
12931129 |
T |
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| Q |
105 |
tagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgt |
204 |
Q |
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| T |
12931128 |
tagaagtgagtttaatcatcgtaccag---------tgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgt |
12931038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 51303217 - 51303013
Alignment:
| Q |
4 |
tgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagttt |
103 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51303217 |
tgtcaccttatatggcttagtgtctcccttttctacaggatcatacatatccttgcagtaaagtatatcctccatttttggcttccaaatggagtagttt |
51303118 |
T |
|
| Q |
104 |
gtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttg |
203 |
Q |
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|
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
51303117 |
gtagaagtgagtttaatcattgtaccagtgttaccaatgttctcttccatttaatttacactataatctcgagctccaactggagctccgataccacttg |
51303018 |
T |
|
| Q |
204 |
ttggg |
208 |
Q |
| |
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||||| |
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| T |
51303017 |
ttggg |
51303013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 24876603 - 24876720
Alignment:
| Q |
11 |
ttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaag |
110 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||| |||||||| |||||| |
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| T |
24876603 |
ttatctggctccgtgtctcccttttctgcaggatcatatgtatcattgcagtaaagtatatcctccgttttcgacttccaaatgaagtagtttctagaag |
24876702 |
T |
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| Q |
111 |
tgagtttaatcatcgtac |
128 |
Q |
| |
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| T |
24876703 |
tgagtttaatcatcgtac |
24876720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 38996982 - 38997071
Alignment:
| Q |
27 |
ctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtt |
116 |
Q |
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|
|||||||||||||||| |||||||||||| ||| |||| |||||||| |||||| | ||| || || ||||||||||||||||||||| |
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| T |
38996982 |
ctcccttttctacagggtcatacatatccatgttataaattatatccttcattttcgacttttaactgaagtagtttgtagaagtgagtt |
38997071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 38994631 - 38994706
Alignment:
| Q |
135 |
taccagtgttctcc-tccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggc |
209 |
Q |
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|
|||||||||||||| ||| |||||| |||| ||| ||||||| | |||| |||||||||||||||||||||||| |
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| T |
38994631 |
taccagtgttctccctccgtttaatatacataataatctcgagtttcaactagagctctgataccacttgttgggc |
38994706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 2757156 - 2757194
Alignment:
| Q |
145 |
ctcctccatttaatttacactatactctcgagctccaac |
183 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
2757156 |
ctcctccatttaatttacactataatctcgagctccaac |
2757194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 15290616 - 15290587
Alignment:
| Q |
180 |
caaccggagctctgataccacttgttgggc |
209 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
15290616 |
caaccggagctctgataccacttgttgggc |
15290587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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