View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11221_low_3 (Length: 670)

Name: NF11221_low_3
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11221_low_3
NF11221_low_3
[»] chr4 (5 HSPs)
chr4 (516-653)||(51719154-51719291)
chr4 (527-668)||(628697-628838)
chr4 (379-437)||(38653608-38653666)
chr4 (350-390)||(38653709-38653749)
chr4 (243-271)||(45246608-45246636)
[»] chr3 (12 HSPs)
chr3 (516-670)||(21566378-21566532)
chr3 (587-670)||(44430696-44430779)
chr3 (577-670)||(53814089-53814181)
chr3 (523-670)||(13840056-13840203)
chr3 (524-670)||(39685787-39685933)
chr3 (381-433)||(21566604-21566656)
chr3 (229-299)||(21566836-21566906)
chr3 (379-428)||(11423223-11423272)
chr3 (229-274)||(53814357-53814402)
chr3 (350-390)||(21566677-21566717)
chr3 (604-668)||(24902167-24902231)
chr3 (243-271)||(35995552-35995580)
[»] scaffold0041 (2 HSPs)
scaffold0041 (521-670)||(24067-24216)
scaffold0041 (229-274)||(23724-23769)
[»] chr6 (8 HSPs)
chr6 (379-440)||(34131542-34131603)
chr6 (523-670)||(25403340-25403487)
chr6 (543-670)||(2030141-2030268)
chr6 (229-274)||(25403803-25403848)
chr6 (254-337)||(34131687-34131768)
chr6 (379-437)||(2030380-2030438)
chr6 (229-274)||(17436337-17436382)
chr6 (243-271)||(4321385-4321413)
[»] chr1 (4 HSPs)
chr1 (527-658)||(48957089-48957220)
chr1 (523-670)||(28445848-28445995)
chr1 (521-670)||(49030826-49030974)
chr1 (229-266)||(28446335-28446372)
[»] chr7 (4 HSPs)
chr7 (523-667)||(41799147-41799291)
chr7 (229-267)||(41798792-41798830)
chr7 (243-271)||(26501204-26501232)
chr7 (243-271)||(26591482-26591510)
[»] chr5 (4 HSPs)
chr5 (591-670)||(6705458-6705537)
chr5 (229-274)||(6705844-6705889)
chr5 (233-276)||(25994905-25994948)
chr5 (243-271)||(762960-762988)
[»] scaffold0246 (1 HSPs)
scaffold0246 (524-670)||(2159-2305)
[»] chr8 (3 HSPs)
chr8 (577-670)||(9387238-9387331)
chr8 (229-274)||(9387675-9387720)
chr8 (229-269)||(27855863-27855902)
[»] chr2 (6 HSPs)
chr2 (527-670)||(942566-942709)
chr2 (229-274)||(24929090-24929135)
chr2 (231-274)||(25678698-25678741)
chr2 (229-274)||(943040-943085)
chr2 (229-270)||(25770362-25770402)
chr2 (243-271)||(31133600-31133628)
[»] scaffold0262 (1 HSPs)
scaffold0262 (604-669)||(8875-8940)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 516 - 653
Target Start/End: Complemental strand, 51719291 - 51719154
Alignment:
Q  516 gacaatactgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaat 615  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| |  |||||| |||| | ||||||||  |||||||||||| ||| ||||||||| ||    
T  51719291 gacactactgctgctcctgtggactatgagtcctagacctcctcctcggaacctgatgatcgtcaaacacgctataatcggtccggaggccctccaagat 51719192  T
Q  616 gcctaagaagagtggatttgaaaccacctatggaatct 653  Q
    || |||||||||||||||||||||||||| ||||||||    
T  51719191 gcttaagaagagtggatttgaaaccacctctggaatct 51719154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 527 - 668
Target Start/End: Original strand, 628697 - 628838
Alignment:
Q  527 tgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaagaaga 626  Q
    ||||| || ||||||||||||||||||| ||| |  |||||| | || | ||||||||  |||||||||||| |||  ||||||||  |||  |||||||    
T  628697 tgctcatgcggactatgactcctagacctcctcctcggaacctgctgatcgtcaaacacgctataatcggtccggagcccctccaagttgctgaagaaga 628796  T
Q  627 gtggatttgaaaccacctatggaatctccatcacatgctcca 668  Q
    ||||||| |||||||||| |||||||| |||| |||||||||    
T  628797 gtggattagaaaccacctctggaatctgcatcgcatgctcca 628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 38653666 - 38653608
Alignment:
Q  379 tcataatttagaaacgcaattttaacgaaaattaactcaaatgtcataaagaggcgcaa 437  Q
    |||||||||||| || |||| |||||||||||||||| |||||||||||| | ||||||    
T  38653666 tcataatttagatacacaatattaacgaaaattaactaaaatgtcataaataagcgcaa 38653608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 38653749 - 38653709
Alignment:
Q  350 gtacaaccattcattcattcgacaaaaactcataatttaga 390  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  38653749 gtacaaccattcattcattcaacaaaaactcacaatttaga 38653709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 45246636 - 45246608
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  45246636 gttaacactagcgtgagttaactcacgct 45246608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 516 - 670
Target Start/End: Complemental strand, 21566532 - 21566378
Alignment:
Q  516 gacaatactgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaat 615  Q
    |||| ||||||||||| |||||||||||||||||||||| ||| |   ||||| | || | ||||||||  |||||||||||||| | ||||||||||||    
T  21566532 gacattactgctgctcatgtggactatgactcctagacctcctcctcagaacctgctgatggtcaaacacgctataatcggtctgtaggccctccaaaat 21566433  T
Q  616 gcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||  ||||| |||||||||||||||||||  ||||||| |||| |||||||||||    
T  21566432 gctgaagaaaagtggatttgaaaccacctcaggaatctgcatcgcatgctccact 21566378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 670
Target Start/End: Original strand, 44430696 - 44430779
Alignment:
Q  587 ctataatcggtctggaagccctccaaaatgcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    |||||||||||| ||| ||||||||| ||||  ||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  44430696 ctataatcggtccggaggccctccaagatgctgaagaagagtggatttgaaaccacctctggaatctgcatcgcatgctccact 44430779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 577 - 670
Target Start/End: Complemental strand, 53814181 - 53814089
Alignment:
Q  577 gtcaaacattctataatcggtctggaagccctccaaaatgcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||| | |||||| |||| |||||||||||    
T  53814181 gtcaaacacactataatcggtctggaggccctccaaaatgccaaagaagaatggatttg-aaccacctctagaatctgcatcgcatgctccact 53814089  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 523 - 670
Target Start/End: Complemental strand, 13840203 - 13840056
Alignment:
Q  523 ctgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaag 622  Q
    |||||||||||| ||||||||||||||||||| | | | ||||||| | || | ||||||||  || ||||||||||||| ||| ||||| ||||  |||    
T  13840203 ctgctgctcctgcggactatgactcctagacctcttccttggaacctgctgatcgtcaaacacgctgtaatcggtctggaggccttccaagatgctgaag 13840104  T
Q  623 aagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    || ||| ||||||||||||||| | |||| | |||| |||||| ||||    
T  13840103 aatagtagatttgaaaccacctctcgaatgtgcatcgcatgctacact 13840056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 670
Target Start/End: Original strand, 39685787 - 39685933
Alignment:
Q  524 tgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaaga 623  Q
    ||||||||||| || |||||||||||||||| ||| |  || |||   || | ||||||||  |||||||||||  ||| || |||||| ||||  ||||    
T  39685787 tgctgctcctgcgggctatgactcctagacctcctcctcggtacctactgatcgtcaaacacgctataatcggttcggaggctctccaagatgctaaaga 39685886  T
Q  624 agagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||||||||||| ||||||||| |||||||| |||  |||||||||||    
T  39685887 agagtggatttaaaaccacctctggaatctgcatggcatgctccact 39685933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 21566656 - 21566604
Alignment:
Q  381 ataatttagaaacgcaattttaacgaaaattaactcaaatgtcataaagaggc 433  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  21566656 ataatttaaaaacgcgattttaactaaaattaactcaaatgtcataaagaggc 21566604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 21566906 - 21566836
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggtactgttctcgcaccagaacagacag 299  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||| || |    ||||||||||||||||    
T  21566906 taagtcacgctagtgttaacactagcgtgagttaactcacgttggttctatgtaagcaccagaacagacag 21566836  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 11423223 - 11423272
Alignment:
Q  379 tcataatttagaaacgcaattttaacgaaaattaactcaaatgtcataaa 428  Q
    ||||| |||||| | ||||| |||||||||||||||| ||||||||||||    
T  11423223 tcatagtttagacatgcaatattaacgaaaattaactaaaatgtcataaa 11423272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 53814402 - 53814357
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  ||||||||| |||||||||||||||| ||||    
T  53814402 taagtcacgctagttttaacactaacgtgagttaactcacgttggt 53814357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 21566717 - 21566677
Alignment:
Q  350 gtacaaccattcattcattcgacaaaaactcataatttaga 390  Q
    ||||||||||||||| |||| || |||||||||||||||||    
T  21566717 gtacaaccattcattgattcaaccaaaactcataatttaga 21566677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 604 - 668
Target Start/End: Complemental strand, 24902231 - 24902167
Alignment:
Q  604 gccctccaaaatgcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctcca 668  Q
    ||||||||||||||  || || |||||||||||||||||||   ||||||||||  |||||||||    
T  24902231 gccctccaaaatgctaaaaaatagtggatttgaaaccacctcaagaatctccattgcatgctcca 24902167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 35995552 - 35995580
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  35995552 gttaacactagcgtgagttaactcacgct 35995580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 521 - 670
Target Start/End: Original strand, 24067 - 24216
Alignment:
Q  521 tactgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgccta 620  Q
    |||||||||||||| ||||||||||||||| ||| ||| |  |||||| | || | ||||||||  ||||||||| || ||| |||||| || ||||  |    
T  24067 tactgctgctcctgcggactatgactcctatacctcctcctcggaacctgctgatcgtcaaacacgctataatcgttccggaggccctctaagatgctga 24166  T
Q  621 agaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||||||||||||| |||||||||| |||||||| |||| |||||||||||    
T  24167 agaagagtggattagaaaccacctctggaatctgcatcgcatgctccact 24216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 23724 - 23769
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||    
T  23724 taagtcacgctagttttaacacgagcttgagttaactcacgctggt 23769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 34131603 - 34131542
Alignment:
Q  379 tcataatttagaaacgcaattttaacgaaaattaactcaaatgtcataaagaggcgcaaccg 440  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34131603 tcataatttagaaacacaattttaacgaaaattaactcaaatgtcataaagaggcgcaaccg 34131542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 670
Target Start/End: Complemental strand, 25403487 - 25403340
Alignment:
Q  523 ctgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaag 622  Q
    ||||| |||||| ||||||||||||||| ||| ||| |  |||||| | || | ||||||||   |||||||||| |||| |||||| || |||   |||    
T  25403487 ctgctactcctgcggactatgactcctatacctcctcctcggaacctgctgatcgtcaaacacgttataatcggtttggatgccctctaagatgttgaag 25403388  T
Q  623 aagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||||    
T  25403387 aagagtggattagaaaccacctctggaatctgcatcacatgctccact 25403340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 670
Target Start/End: Complemental strand, 2030268 - 2030141
Alignment:
Q  543 gactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaagaagagtggatttgaaaccac 642  Q
    ||||||||  || ||||| ||||||||| | || ||||||||   ||||||||| | |||  ||||||||||||   || ||||||||||||||| ||||    
T  2030268 gactcctactcctccttcgtggaaccggctccttgtcaaacacgatataatcggacaggagaccctccaaaatgttgaaaaagagtggatttgaagccac 2030169  T
Q  643 ctatggaatctccatcacatgctccact 670  Q
    || ||||||||||||| |||||||||||    
T  2030168 ctctggaatctccatcgcatgctccact 2030141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 25403848 - 25403803
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  25403848 taagtcacgctagttttaacactagcgtgagttaactcacgctggt 25403803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 34131768 - 34131687
Alignment:
Q  254 cgtgagttaactcacgctggtactgttctcgcaccagaacagacagacaatagctactgccttgttccctgtttatcttcgttc 337  Q
    |||||||||||||||||| ||  |||   ||||| || ||| |||| |||||||||||||||||||||||||||| ||||||||    
T  34131768 cgtgagttaactcacgctagttttgt--gcgcactaggacatacaggcaatagctactgccttgttccctgtttagcttcgttc 34131687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 2030438 - 2030380
Alignment:
Q  379 tcataatttagaaacgcaattttaacgaaaattaactcaaatgtcataaagaggcgcaa 437  Q
    |||||||||||| ||||| | |||||||||||||||| |||||||||||| | ||||||    
T  2030438 tcataatttagatacgcactattaacgaaaattaactaaaatgtcataaataagcgcaa 2030380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 17436382 - 17436337
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  17436382 taagtcacgctagttttaacactagcgtgagttaactcacgttggt 17436337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 4321413 - 4321385
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  4321413 gttaacactagcgtgagttaactcacgct 4321385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 527 - 658
Target Start/End: Complemental strand, 48957220 - 48957089
Alignment:
Q  527 tgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaagaaga 626  Q
    ||||| ||| ||||||||||||||  || ||| | |||||| |  | |||||||||||  |||||||||||||||| ||||||||||||||  || ||||    
T  48957220 tgctcttgtagactatgactcctactcctcctccgtggaactgactcctagtcaaacacgctataatcggtctggaggccctccaaaatgctgaaaaaga 48957121  T
Q  627 gtggatttgaaaccacctatggaatctccatc 658  Q
    |||||| ||||||||||| |||||||||||||    
T  48957120 gtggatgtgaaaccacctctggaatctccatc 48957089  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 670
Target Start/End: Complemental strand, 28445995 - 28445848
Alignment:
Q  523 ctgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaag 622  Q
    ||||| |||||| ||| ||||||||||||||| | | |  |||||  | || | ||||||||  ||||||||||||  || ||||||||||||| | |||    
T  28445995 ctgctactcctgcggaatatgactcctagacctcgtcctcggaacatgctgatggtcaaacacgctataatcggtccagaggccctccaaaatgtcaaag 28445896  T
Q  623 aagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    |||||||||||||||||||||| |||||||| |||| |||||| ||||    
T  28445895 aagagtggatttgaaaccacctctggaatctgcatcgcatgcttcact 28445848  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 521 - 670
Target Start/End: Original strand, 49030826 - 49030974
Alignment:
Q  521 tactgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgccta 620  Q
    |||||||| ||||| ||| ||||||||||||||| ||| | | ||||| | || | ||||||||  |||||||||||| ||| |||||| || |||   |    
T  49030826 tactgctggtcctgcggattatgactcctagacctcctcc-tcgaacctgctgatcgtcaaacacgctataatcggtccggaggccctctaagatgttga 49030924  T
Q  621 agaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||||||||||||| |||||||||| ||||||||  ||| |||||||||||    
T  49030925 agaagagtggattagaaaccacctctggaatctggatcgcatgctccact 49030974  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 28446372 - 28446335
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactc 266  Q
    |||||||||||||  |||||||||||||||||||||||    
T  28446372 taagtcacgctagttttaacactagcgtgagttaactc 28446335  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 667
Target Start/End: Original strand, 41799147 - 41799291
Alignment:
Q  523 ctgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaag 622  Q
    ||||||||| || ||||||||||||||||||| ||| |  |||||| | || | ||||||||  ||||||||| || ||| |||||| || ||||  |||    
T  41799147 ctgctgctcttgcggactatgactcctagacctcctcctcggaacctgctgatcgtcaaacacgctataatcgatccggaggccctctaagatgctcaag 41799246  T
Q  623 aagagtggatttgaaaccacctatggaatctccatcacatgctcc 667  Q
    ||||||||||| |||||||| | |||||||| |||| ||||||||    
T  41799247 aagagtggattagaaaccacatctggaatctgcatcgcatgctcc 41799291  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 41798792 - 41798830
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactca 267  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  41798792 taagtcacgctagttttaacactagcgtgagttaactca 41798830  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 26501204 - 26501232
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  26501204 gttaacactagcgtgagttaactcacgct 26501232  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 26591510 - 26591482
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  26591510 gttaacactagcgtgagttaactcacgct 26591482  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 591 - 670
Target Start/End: Complemental strand, 6705537 - 6705458
Alignment:
Q  591 aatcggtctggaagccctccaaaatgcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    |||||||| | | ||||||||||||||| ||||||||||||||||||||||||| || ||||| |||| |||||||||||    
T  6705537 aatcggtccgaaggccctccaaaatgccaaagaagagtggatttgaaaccacctctgaaatctgcatcgcatgctccact 6705458  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 6705889 - 6705844
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  6705889 taagtcacgctagttttaacactagcgtgagttaactcacgttggt 6705844  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 25994948 - 25994905
Alignment:
Q  233 tcacgctagagttaacactagcgtgagttaactcacgctggtac 276  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||    
T  25994948 tcacgcgagaattaacacttgcgtgagttaactcacgctggtac 25994905  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 762988 - 762960
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  762988 gttaacactagcgtgagttaactcacgct 762960  T

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Target: scaffold0246 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 524 - 670
Target Start/End: Complemental strand, 2305 - 2159
Alignment:
Q  524 tgctgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaaga 623  Q
    ||||||||||| |||| ||||| |||||||  ||| |  |||||| | || | ||||||||  |||||||||||| ||| |||||| || ||||  ||||    
T  2305 tgctgctcctgcggacaatgacccctagacttcctcctcggaacctgctgatcgtcaaacacgctataatcggtccggaggccctctaagatgctgaaga 2206  T
Q  624 agagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||| |||||| |||||||||  |||||||| ||||||||||||||||    
T  2205 agaatggattagaaaccacccctggaatcttcatcacatgctccact 2159  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 577 - 670
Target Start/End: Complemental strand, 9387331 - 9387238
Alignment:
Q  577 gtcaaacattctataatcggtctggaagccctccaaaatgcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    ||||||||  |||||||||||||||| |||||| || ||||  |||||||||  ||| |||||||||| ||||||||||||| |||||||||||    
T  9387331 gtcaaacacgctataatcggtctggatgccctctaagatgctgaagaagagtaaattagaaaccacctctggaatctccatcgcatgctccact 9387238  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 9387720 - 9387675
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||    
T  9387720 taagtcacgctagtcttaacactagcatgagttaactcacgctggt 9387675  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 27855863 - 27855902
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacg 269  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  27855863 taagtcacgc-agaattaacactagcgtgagttaactcacg 27855902  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 670
Target Start/End: Complemental strand, 942709 - 942566
Alignment:
Q  527 tgctcctgtggactatgactcctagacccccttcatggaaccggatgctagtcaaacattctataatcggtctggaagccctccaaaatgcctaagaaga 626  Q
    ||||||||  |||||||||||||||||| ||| |  |||||  | || | ||||||||  |||||||||||||||| |||||| || |||   |||||||    
T  942709 tgctcctgcagactatgactcctagacctcctcctcggaacttgttgatcgtcaaacacgctataatcggtctggaggccctctaagatgttgaagaaga 942610  T
Q  627 gtggatttgaaaccacctatggaatctccatcacatgctccact 670  Q
    |||||||  ||||||||| |||||| | |||| |||||||||||    
T  942609 gtggattaaaaaccacctctggaatttgcatcgcatgctccact 942566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 24929135 - 24929090
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  24929135 taagtcacgctagttttaacactagcgtgagttaactcacgctggt 24929090  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 25678741 - 25678698
Alignment:
Q  231 agtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||  ||||||| |||||||||||||||||||||||    
T  25678741 agtcacgctagttttaacacgagcgtgagttaactcacgctggt 25678698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 943085 - 943040
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgctggt 274  Q
    |||||||||||||  ||||||| |||||||||||||||| ||||||    
T  943085 taagtcacgctagttttaacacgagcgtgagttaactcaagctggt 943040  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 25770362 - 25770402
Alignment:
Q  229 taagtcacgctagagttaacactagcgtgagttaactcacgc 270  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  25770362 taagtcacgc-agatttaacactagcgtgagttaactcacgc 25770402  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 31133600 - 31133628
Alignment:
Q  243 gttaacactagcgtgagttaactcacgct 271  Q
    |||||||||||||||||||||||||||||    
T  31133600 gttaacactagcgtgagttaactcacgct 31133628  T

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Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 669
Target Start/End: Original strand, 8875 - 8940
Alignment:
Q  604 gccctccaaaatgcctaagaagagtggatttgaaaccacctatggaatctccatcacatgctccac 669  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||| |||| |||| |||||    
T  8875 gccctccaaaatgccgaagaagagtggatttgaaaccaccttcggaatctgcatcgcatgttccac 8940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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