View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11221_low_5 (Length: 499)
Name: NF11221_low_5
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 37221556 - 37222033
Alignment:
| Q |
1 |
aaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37221556 |
aaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctatttctaaggataccatgattgaggctgagttgctgcagaggt |
37221655 |
T |
|
| Q |
101 |
acaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggattttatttttctgtcatgctttggttttctggtagtg |
200 |
Q |
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| T |
37221656 |
acaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggattttatttttctgtcatgctttggttttctggtagtg |
37221755 |
T |
|
| Q |
201 |
gaaattttgtgcttgttctgaatttttctgtcatggttctaatatacacacatcaagcccaataatcatttatacaaacaccatttaagtaacttttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221756 |
gaaattttgtgcttgttctgaatttttctgtcattgttctaatatacacacatcaagcccaataatcatttatacaaacaccatttaagtaacttttgaa |
37221855 |
T |
|
| Q |
301 |
ttttatttctttctaaattttgctctgtttttgttatnnnnnnnttgttctgttttaataatcc-tttagaatgttaaaaaacgtttgattatggtatag |
399 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
37221856 |
ttttatttctttctaaattttgctctgtttttgttataaaaaaattgttctgttttaataatccgtttagaatgttaaaaaacgtttga-tatggtatag |
37221954 |
T |
|
| Q |
400 |
ttggttttcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatga |
478 |
Q |
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| T |
37221955 |
ttggttttcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatga |
37222033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 37201057 - 37201237
Alignment:
| Q |
3 |
ggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggtac |
102 |
Q |
| |
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||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
37201057 |
ggattatggattgttcatcacatatccacttagaagtgaggacactttggagtctattgctaagggtgcagagattgaggctgagttgctgcagaggtac |
37201156 |
T |
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| Q |
103 |
aaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggatttt--atttttctgtcatg |
181 |
Q |
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| T |
37201157 |
aaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggttagttttttaatttttctgtcatg |
37201237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 37440600 - 37440762
Alignment:
| Q |
1 |
aaggattatggtttgttcatcacataccctcttagttctaaggacactt----tggagtctattgctaaggataccatgattgaggctgagttgctgcag |
96 |
Q |
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|
|||||||||||||||||| | ||||| |||||||||||| ||||||||| ||||||| ||||| |||||||||| ||| || ||||||||||||||| |
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| T |
37440600 |
aaggattatggtttgttcgtaacatatcctcttagttctgaggacacttagtttggagtccattgcaaaggataccaagatggatgctgagttgctgcag |
37440699 |
T |
|
| Q |
97 |
aggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
159 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37440700 |
aggtacaacccaggtgtgaatttcagccaaggaagtggtctggtttttattccagggaaaggt |
37440762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 37227032 - 37227188
Alignment:
| Q |
4 |
gattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggtaca |
103 |
Q |
| |
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||||||||||||||||| ||||| |||||||| || | ||||||||||| || ||||||||| |||||| | || ||| |||||||||||||||||||| |
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| T |
37227032 |
gattatggtttgttcattacatatcctcttagacctgacgacactttggaatccattgctaagtataccaaggttaagggtgagttgctgcagaggtaca |
37227131 |
T |
|
| Q |
104 |
accctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggtt |
160 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
37227132 |
accctggtgtcaatttcagccaaggaaggggtcttgtttatattccagggaaaggtt |
37227188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 37386923 - 37386765
Alignment:
| Q |
1 |
aaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| ||| |||| | || || |||||||||| |||| || |
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| T |
37386923 |
aaggattatggtttgttcataacatatcctcttagttctgaggacactttggagtccattgcgaagcatacaaaagttaagcctgagttgctacagaagt |
37386824 |
T |
|
| Q |
101 |
acaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
159 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |
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| T |
37386823 |
acaaccctggtgtgaatttcagcaaaggaagtgggctggtttttattccagggaaaggt |
37386765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 37215637 - 37215814
Alignment:
| Q |
45 |
cactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgttttt |
144 |
Q |
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|
|||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||| | |
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| T |
37215637 |
cactttggagtccattgctaaggatacgatgattgaaattgagttgctgaagaggtacaac------gtgaatttcagccaaggaagtggtcttgtttat |
37215730 |
T |
|
| Q |
145 |
attccagggaaaggttggat--tttatttttctgtcatgctttggttttctggtag-tggaaattttgtgcttgttctgaattt |
225 |
Q |
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|||| ||||||||||| ||| || ||||||||||| | |||||| ||||| ||| |||||| |||||||||||| ||||||| |
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| T |
37215731 |
attcgagggaaaggttagatcattcatttttctgtccttttttggtcttctgatagttggaaagtttgtgcttgttatgaattt |
37215814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 407 - 474
Target Start/End: Original strand, 37230884 - 37230951
Alignment:
| Q |
407 |
tcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgtta |
474 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
37230884 |
tcatggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgtta |
37230951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 37227394 - 37227459
Alignment:
| Q |
409 |
atggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgtta |
474 |
Q |
| |
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|||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
37227394 |
atggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgtta |
37227459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 37215949 - 37216011
Alignment:
| Q |
416 |
agtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatga |
478 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||| |
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| T |
37215949 |
agtaatcaataaatgataatattatatcaaactttttatttgtttgttcctctgttttaatga |
37216011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 37196155 - 37196238
Alignment:
| Q |
76 |
attgaggctgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
159 |
Q |
| |
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||||| |||||||||||||| | ||| ||||||||||| ||||| || ||||| |||||| | |||| |||||| ||||||||| |
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| T |
37196155 |
attgatgctgagttgctgcaaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaaggt |
37196238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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