View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11221_low_7 (Length: 449)
Name: NF11221_low_7
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 291 - 415
Target Start/End: Complemental strand, 19890232 - 19890108
Alignment:
| Q |
291 |
gaggagttattatcatatagtattagggaccaacctaaactgttcaatagattgtactcttttcttcactttctacttgagtcattcaaatacagtaaca |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19890232 |
gaggagttattatcatatagtattagggaccaacctaaactgttcaatagattgtactcttttcttcactttctacttgagtcattcaaacacagtaaca |
19890133 |
T |
|
| Q |
391 |
gaaacaggaagcaataacaacaaca |
415 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
19890132 |
gaaacaggaagcaataacaacaaca |
19890108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 19890500 - 19890364
Alignment:
| Q |
13 |
cagaatagccatccaaatgaacctttcactcacacaatctttctctctctagaatttcttttttcttaacaaaacaataaacttcctacatacaattacc |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19890500 |
cagaatagccatccaaatgaagctttcactcacacaatctttctctctctaaaatttcttttttcttaacaaaaca-------------atacaattacc |
19890414 |
T |
|
| Q |
113 |
atatccacaccct---cttctccattcacacctctaatagattctcccat |
159 |
Q |
| |
|
| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
19890413 |
acatccacaccctctcctcctccattcacacctctaatagattctcccat |
19890364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University