View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11221_low_8 (Length: 429)
Name: NF11221_low_8
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_8 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 427
Target Start/End: Original strand, 42923360 - 42923783
Alignment:
| Q |
5 |
aaaaaagaacaaagcctagttagccccaaaggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgt |
104 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42923360 |
aaaaaagaacaaaggctagttagcccctagggaagagagtttctcaagcatcatctttaatcagctaaatcatcccattaggaggtgaggcatgaatcgt |
42923459 |
T |
|
| Q |
105 |
caacacagaatctgaagccgcttccaactttacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatg |
204 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42923460 |
caacacaaaatttgaagccgcttgcaactttacaagaaaatttgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaacgatg |
42923559 |
T |
|
| Q |
205 |
aggtcctttatgtcttgaatgagagttacatagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacga |
304 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42923560 |
aggtcctttatgtcttcaatgagagtggcatagacatgaaacttcatggaagggtcgttgatgaggctaaccgagtggagagagttggagtagcacacga |
42923659 |
T |
|
| Q |
305 |
aatcggatattcccatatctaaaacaaatcgcagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaa |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42923660 |
aatcggatattcccatatctgaaacaaatcacagaccttgaaagatggcttggagctcggccaaaagaatgtcaagcgcgttggcaatgttcccggagaa |
42923759 |
T |
|
| Q |
404 |
atcagagataaataatctcgcact |
427 |
Q |
| |
|
| ||||||||||||||| |||||| |
|
|
| T |
42923760 |
accagagataaataatcccgcact |
42923783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 32105993 - 32106072
Alignment:
| Q |
210 |
ctttatgtcttgaatgagagttacatagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagt |
289 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| || ||||| |||| |
|
|
| T |
32105993 |
ctttatatcttgaatgagagtggcatagacatgaaacttcatgggaggtcagttgatgaggctaacagaatggagggagt |
32106072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 35 - 429
Target Start/End: Original strand, 1577058 - 1577452
Alignment:
| Q |
35 |
ggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctgaagccgcttccaactt |
134 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
1577058 |
ggaagagagttcctcaagcatcatctttaatcagctgaatcatcccatcaggaggtgaggcatgaatcttcaacacagaatccgaagccgctcccaactt |
1577157 |
T |
|
| Q |
135 |
tacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtcttgaatgagagttaca |
234 |
Q |
| |
|
| ||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
1577158 |
tgcaaaaaaatctgcgcaataatttccctcacggagagtgtgaaaaacaaaagtcttgctggtaatgatgaggtcctttatgtcttcaatgagagtggca |
1577257 |
T |
|
| Q |
235 |
tagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattcccatatctaaaacaaatc |
334 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| | |||| |||| |
|
|
| T |
1577258 |
tagacatgaaa-ttcatggaagggtcgttgatgaggctaacagagtggagagagttagagtagcacacgaaataggatattcccatatatgaaaccaatc |
1577356 |
T |
|
| Q |
335 |
gcagaccttgaa-aatagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaaatcagagataaataatctcgcactgt |
429 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| || |||||||||||| |||||||| |
|
|
| T |
1577357 |
gcagaccttgaatgatggcgtggagctcggccaaaagaatatcagacgcgttggcaatgttcccgaagaaaccaaagataaataatcccgcactgt |
1577452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 35 - 420
Target Start/End: Complemental strand, 14116332 - 14115946
Alignment:
| Q |
35 |
ggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctgaagccgcttccaactt |
134 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
14116332 |
ggaagagagtttccaaagtatcatctttaatcagttgaatcatcccatcaggaggtgaggcatgaatcgtcaacacagagtccgaagccgctcccaactt |
14116233 |
T |
|
| Q |
135 |
tacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtcttgaatgagagttaca |
234 |
Q |
| |
|
| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
14116232 |
tgcaagaaaatttgcgcagtaatttccctcacggagagtgtgaaaaacagaagccttgctagtaatgatgaggtcctttatgttttgaatgagagtgaca |
14116133 |
T |
|
| Q |
235 |
tagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattcccatatctaaaacaaatc |
334 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |
|
|
| T |
14116132 |
tagacatgaaacctcatggaagggtcgttgatgaggctaacgtagtggagagagtcggagtagcacacgaaatcggatattcccatatctgaaaccattc |
14116033 |
T |
|
| Q |
335 |
gcagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaaatcagagataaataatc |
420 |
Q |
| |
|
||||||||||||| || || ||||| |||||||||||||||||| ||||||||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
14116032 |
gcagaccttgaaatatggcatggagttcggccaaaagaatgtcaaacgcgttggcaatgttcccggataaaccatagacaaataatc |
14115946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 31727440 - 31727823
Alignment:
| Q |
20 |
ctagttagccccaaaggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctga |
119 |
Q |
| |
|
|||| ||||||| | ||||||||||| | |||||||||||||||||||| | |||||| |||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
31727440 |
ctagctagcccctagggaagagagttccccaagcatcatctttaatcagttgaatcattccatcaagaggtgaggcgtgaatcgtcaacacagggtctga |
31727539 |
T |
|
| Q |
120 |
agccgcttccaactttacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtct |
219 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
31727540 |
agccgctcccaactttgcaagaaaatctgggcaataatttccctcaaggagagtgtgaaaaatagaagccttgttggtaatgacgaggtcctttatgtct |
31727639 |
T |
|
| Q |
220 |
tgaatgagagttacatagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattccca |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31727640 |
tgaatgagagtggcatagacatgaaacttcatggaagggctgttgatgaggctaacggagtggagagagtcggagtagcacacaaaatcggatattcccg |
31727739 |
T |
|
| Q |
320 |
tatctaaaacaaatcgcagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggaga |
402 |
Q |
| |
|
||||| |||| | ||| ||||||||||| || || ||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31727740 |
tatctgaaaccattcgtagaccttgaaagatggcatggagttcggccaaaagaatgtcagacgcgttggcaatgttcccggaga |
31727823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 35 - 429
Target Start/End: Complemental strand, 48850422 - 48850027
Alignment:
| Q |
35 |
ggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctgaagccgcttccaactt |
134 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
48850422 |
ggaagagagttccccaagcatcatctttaatcagttgaatcatcccttcaggaggtgagacatgaatcgtcaacacagtgtctgaagccgctcccaactt |
48850323 |
T |
|
| Q |
135 |
tacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtcttgaatgagagttaca |
234 |
Q |
| |
|
| |||||||| || ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
48850322 |
tgcaagaaaaaatgtgcagtaatatccctcacggagagtgtgaaaaacagaagcattgctggtaatgatgaggtcctttatgtcttgaatgagattggga |
48850223 |
T |
|
| Q |
235 |
tagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattcccatatctaaaacaaatc |
334 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |||| | || |
|
|
| T |
48850222 |
tagacatgaaacttcatggaagggccgttaatgaggctaacggagtggagagagtcggagtagcacacgaaatcgaatattctcatatctgaaactattc |
48850123 |
T |
|
| Q |
335 |
gcagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaaatcagagataaataatctcgcactgt |
429 |
Q |
| |
|
||||||||| ||| || || || || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
48850122 |
gcagaccttaaaagatggcatgtagttcggccaaaagaatgtcagacgcgttggcaatgttcccggagaaactagagataaataatcttgcactgt |
48850027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 429
Target Start/End: Complemental strand, 43924519 - 43924135
Alignment:
| Q |
35 |
ggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctgaagccgcttccaactt |
134 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||| | || ||||||||| ||||||| |
|
|
| T |
43924519 |
ggaagagagttcc-caagcatcatctttagtcagttgaatcatcccatcaggaggtgagacatgaatcgtcaacacatagtcagaagccgctcccaactt |
43924421 |
T |
|
| Q |
135 |
tacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtcttgaatgagagttaca |
234 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||| | ||||| ||| |
|
|
| T |
43924420 |
tgcaagaaaatctgcgcagtaatttccctcacgaagagtgtgaaaaacagaagccttgctggtaataacgaggtactttatgtcggctaacagagtgaca |
43924321 |
T |
|
| Q |
235 |
tagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattcccatatctaaaacaaatc |
334 |
Q |
| |
|
||||||||| ||||| | |||| |||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||| |||| | || |
|
|
| T |
43924320 |
tagacatga----------aagggacattgataaggctaacagagtggagagagtcgaagtagcacacaaaatcagatattcccatatctgaaaccattc |
43924231 |
T |
|
| Q |
335 |
gcagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaaatcagagataaataatctcgcactgt |
429 |
Q |
| |
|
||||||||||||| || || ||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
43924230 |
gcagaccttgaaagatggcatggagttcggccaaaagaatgtcagacgcgttggcaatgttcccggaaaaaccagagataaataatctcgcactgt |
43924135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Original strand, 26241518 - 26241710
Alignment:
| Q |
110 |
cagaatctgaagccgcttccaactttacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtc |
209 |
Q |
| |
|
|||| |||||||| || ||| |||| | |||||||| || || | |||||||||||| || ||||| || | ||||| |||||| |||||| | || |
|
|
| T |
26241518 |
cagagtctgaagcaactcccatctttgctagaaaatcagcacaattatttccctcacgaagggtgtgcaagatagaagtattgctgtgaatgatcaaatc |
26241617 |
T |
|
| Q |
210 |
ctttatgtcttgaatgagagttacatagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacac |
302 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||||| ||| |||||| |||||||| | ||||| ||||||||||||||||| |
|
|
| T |
26241618 |
ctttatatcttgaatgagagtggcatagacatgacacttcatgggaggtccgttgataaggctaacaaaatggagggagtcggagtagcacac |
26241710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 36 - 425
Target Start/End: Complemental strand, 27198 - 26808
Alignment:
| Q |
36 |
gaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctgaagccgcttccaacttt |
135 |
Q |
| |
|
|||||||||||| |||||| || |||||||||| | |||||||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||| || |
|
|
| T |
27198 |
gaagagagtttcccaagcaccaactttaatcagttgaatcatcccatcaggaggtgagacatgaatcgtcaacacagagtccgaagccgctcccaacatt |
27099 |
T |
|
| Q |
136 |
acaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtcttgaatgagagttacat |
235 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
27098 |
tcaagaaaatctgcgcagtaatttccctcacaaagagtgtgaaaaacagaagccttgctggtaatgacgaggtcctttatgtcttgaatgagagtggcat |
26999 |
T |
|
| Q |
236 |
agacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattcccatatctaaaacaaatcg |
335 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||| ||||| |||||||||||||| |||||||||| ||||| ||||||||||||||| ||| | ||| |
|
|
| T |
26998 |
agacatgaaacttcatggaaggtccattgatgagactaacatagtggagagagtcgaagtagcacacaaaatcagatattcccatatctgaaatcattcg |
26899 |
T |
|
| Q |
336 |
cagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaaatcagagataaataatctcgca |
425 |
Q |
| |
|
|||||||||||| || || ||||| ||||||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||||| |||| |
|
|
| T |
26898 |
cagaccttgaaagatggcatggagttcggccaaaagaatgtcagacgtgttggtaatgttcccggggaaaccagagttaaataatcccgca |
26808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 40924639 - 40924233
Alignment:
| Q |
20 |
ctagttagccccaaaggaagagagtttctcaagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctga |
119 |
Q |
| |
|
|||| ||||||| | |||||| |||| | |||||||||||||||||||| ||| ||||||| || ||| |||| |||||||| ||||||||| ||||| |
|
|
| T |
40924639 |
ctagctagcccctagggaagaaagttccctaagcatcatctttaatcagcggaattatcccattagaaggggaggtatgaatcgccaacacagagtctga |
40924540 |
T |
|
| Q |
120 |
agccgcttccaactttacaagaaaatctgcgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtcctttatgtct |
219 |
Q |
| |
|
||||||| || ||| | ||||||||||| || |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
40924539 |
agccgctctcatcttagctagaaaatctgcacagtaatttccctcatggagagtgtgaaaaacagaagcctcgctggtaatgattaggtcctttatgtct |
40924440 |
T |
|
| Q |
220 |
tgaatgagagttacatagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattccca |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
40924439 |
tgaatgagagtggcatagacatgaaacttcatggaagggccgttgatgaggctaacaaagtggagagagtcggagtagcacacaaaatcatatattccca |
40924340 |
T |
|
| Q |
320 |
tatctaaaacaaatcgcagaccttgaaa-atagcgtggagctcggccaaaagaatgtcaggcgcgttggcaatgttcccggagaaatcagagataaataa |
418 |
Q |
| |
|
| | ||| | |||||||| ||||| || ||||| || || || ||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
40924339 |
ttgttgtaaccatgcgcagaccatgaaagatggcgtgaagttcagctggaagaatgtcagaagcgttggcaatgtatctggagaaatcagagataaataa |
40924240 |
T |
|
| Q |
419 |
tctcgca |
425 |
Q |
| |
|
|| |||| |
|
|
| T |
40924239 |
tcccgca |
40924233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 6614962 - 6615019
Alignment:
| Q |
260 |
cgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatcggatattcc |
317 |
Q |
| |
|
|||||| |||||| ||||| ||||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
6614962 |
cgttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcagatattcc |
6615019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 49 - 301
Target Start/End: Original strand, 55416373 - 55416629
Alignment:
| Q |
49 |
caagcatcatctttaatcagctaaatcatcccatcaggaggtgaggcatgaatcgtcaacacagaatctgaagccgcttccaactttacaagaaaatctg |
148 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||| ||| ||| | |||||||||| |
|
|
| T |
55416373 |
caagcatcatctttaatcaatggaatcatcccatcagaagggaaggtatgaatcgtcaacacagaatctgaagctgctcccatcttagctagaaaatctg |
55416472 |
T |
|
| Q |
149 |
cgcattaatttccctcacggagagtgtgaaaaacagaagccttgctggtaatgatgaggtccttta--tgtcttgaatgagagttacatagacatgaaac |
246 |
Q |
| |
|
|| ||||||||||| |||||||| || ||||||||| |||| |||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
55416473 |
tacaataatttccctcctggagagtgcgataaacagaagacttgttggtaatgattaggtcctttatgtgtcttgaatgagagtggcatagacatgaaac |
55416572 |
T |
|
| Q |
247 |
ttcatggaagggtcgttgacgaggctaaccgagtg--gagagagtcggagtagcaca |
301 |
Q |
| |
|
||||||| |||| |||||| ||| || || ||||| |||||||||||||||||||| |
|
|
| T |
55416573 |
ttcatggtagggccgttgatgagactgacagagtggagagagagtcggagtagcaca |
55416629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 2126935 - 2127026
Alignment:
| Q |
217 |
tcttgaatgagagttacatagacatgaaacttcatggaagggtcgttgacgaggctaaccgagtggagagagtcggagtagcacacgaaatc |
308 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| ||| |||||| ||||||||| || |||| ||||||||||||||||| ||||| |
|
|
| T |
2126935 |
tcttaaatgagagtttcatagacatgaaacttcatgggaggtccgttgatgaggctaacagaatggaaggagtcggagtagcacacaaaatc |
2127026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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