View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11221_low_9 (Length: 424)
Name: NF11221_low_9
Description: NF11221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11221_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 6409916 - 6410315
Alignment:
| Q |
14 |
agaaagatgaaatgaaatgggtgtttgagaaatttgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaagctttggataa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6409916 |
agaaagatgaaatgaaatgggtgtttgagaaatttgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaatctttggataa |
6410015 |
T |
|
| Q |
114 |
ggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcatagactttaaagagtttatggaaatgttcaatgga |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6410016 |
ggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcatagactttaaagagttcatggaaatgttcaatgga |
6410115 |
T |
|
| Q |
214 |
gaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctgaggaattgtctcaaatat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410116 |
gaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctgaggaattgtctcaaatat |
6410215 |
T |
|
| Q |
314 |
ttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatggagatggtcttattgatttgaatgagtttac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410216 |
ttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatggagatggtcttattgatttgaatgagtttac |
6410315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 6399843 - 6399441
Alignment:
| Q |
14 |
agaaagatgaaatgaaatgggtgtttgagaaatttgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaagctttggataa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399843 |
agaaagatgaaatgaaatgggtgtttgagaaattcgacaaaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaagctttggataa |
6399744 |
T |
|
| Q |
114 |
ggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcatagactttaaagagtttatggaaatgttcaat |
210 |
Q |
| |
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||||||| | || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399743 |
ggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttatggaaatgttcaat |
6399644 |
T |
|
| Q |
211 |
ggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctgaggaattgtctcaaa |
310 |
Q |
| |
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|||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
6399643 |
ggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaa |
6399544 |
T |
|
| Q |
311 |
tatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatggagatggtcttattgatttgaatgagtt |
410 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6399543 |
tatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtgatggagatggtcttattgatttgaatgagtt |
6399444 |
T |
|
| Q |
411 |
tac |
413 |
Q |
| |
|
||| |
|
|
| T |
6399443 |
tac |
6399441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 6412659 - 6413061
Alignment:
| Q |
14 |
agaaagatgaaatgaaatgggtgtttgagaaatttgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaagctttggataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6412659 |
agaaagatgaaatgaaatgggtgtttgagaaattcgacaaaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaagctttggataa |
6412758 |
T |
|
| Q |
114 |
ggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcatagactttaaagagtttatggaaatgttcaat |
210 |
Q |
| |
|
||||||| | || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6412759 |
ggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttatggaaatgttcaat |
6412858 |
T |
|
| Q |
211 |
ggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctgaggaattgtctcaaa |
310 |
Q |
| |
|
|||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
6412859 |
ggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaa |
6412958 |
T |
|
| Q |
311 |
tatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatggagatggtcttattgatttgaatgagtt |
410 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6412959 |
tatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtgatggagatggtcttattgatttgaatgagtt |
6413058 |
T |
|
| Q |
411 |
tac |
413 |
Q |
| |
|
||| |
|
|
| T |
6413059 |
tac |
6413061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 6405459 - 6405257
Alignment:
| Q |
14 |
agaaagatgaaatgaaatgggtgtttgagaaatttgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaaaagctttggataa |
113 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
6405459 |
agaaagatgaaatgaaacgggttttcgagaaattcgacacaaacaaagatggcaatattagtttggaagagtataaagcagctgcaaaagctttggataa |
6405360 |
T |
|
| Q |
114 |
ggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcatagactttaaagagtttatggaaatgttcaatgga |
213 |
Q |
| |
|
|||| | |||||| |||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6405359 |
gggggtaggggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatggattcatagactttagagagtttatggaaatgttcaatgga |
6405260 |
T |
|
| Q |
214 |
gaa |
216 |
Q |
| |
|
||| |
|
|
| T |
6405259 |
gaa |
6405257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 413
Target Start/End: Complemental strand, 6403072 - 6402956
Alignment:
| Q |
282 |
gaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgat |
381 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagtt---------------tgaaaggtgtcgatggtgat |
6402988 |
T |
|
| Q |
382 |
ggagatggtcttattgatttgaatgagtttac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6402987 |
ggagatggtcttattgatttgaatgagtttac |
6402956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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