View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11222_high_1 (Length: 740)
Name: NF11222_high_1
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_high_1 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 17 - 740
Target Start/End: Complemental strand, 2798662 - 2797939
Alignment:
| Q |
17 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798662 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacc |
2798563 |
T |
|
| Q |
117 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
2798562 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgcaaatttaagaccacccccaaatttcttctcccaatcacgataccgt |
2798463 |
T |
|
| Q |
217 |
tccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798462 |
tccttggcaagagcttcaatgggtgctacataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
2798363 |
T |
|
| Q |
317 |
tcttaccactcccagacggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
416 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798362 |
tcttaccactcccagtcggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
2798263 |
T |
|
| Q |
417 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798262 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
2798163 |
T |
|
| Q |
517 |
atgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798162 |
atgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
2798063 |
T |
|
| Q |
617 |
ctatgaaattcaaagtatgatcctcatcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcac |
716 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798062 |
ctatgaaattcaaagtatgattctcatcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcac |
2797963 |
T |
|
| Q |
717 |
ccaaaacggctcaacatatccatg |
740 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
2797962 |
ccaaaacggctcaacacatccatg |
2797939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 17 - 735
Target Start/End: Original strand, 1673063 - 1673781
Alignment:
| Q |
17 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673063 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacc |
1673162 |
T |
|
| Q |
117 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1673163 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgctaatttaagaccacccccaaatttcttctcccaatcacgataccgt |
1673262 |
T |
|
| Q |
217 |
tccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
316 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673263 |
tccttggcaagagcttcaatgggtgcttcataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
1673362 |
T |
|
| Q |
317 |
tcttaccactcccagacggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
416 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673363 |
tcttaccactccctgtcggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
1673462 |
T |
|
| Q |
417 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673463 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
1673562 |
T |
|
| Q |
517 |
atgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
616 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673563 |
atgtgcctgaaagaaacaggtaaatcagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
1673662 |
T |
|
| Q |
617 |
ctatgaaattcaaagtatgatcctcatcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1673663 |
ctatgaaattcaaagtatgatcctcatcaacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcac |
1673762 |
T |
|
| Q |
717 |
ccaaaacggctcaacatat |
735 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1673763 |
ccaaaacggctcaacatat |
1673781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 17 - 735
Target Start/End: Original strand, 1675538 - 1676256
Alignment:
| Q |
17 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675538 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacc |
1675637 |
T |
|
| Q |
117 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1675638 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgctaatttaagaccacccccaaatttcttctcccaatcacgataccgt |
1675737 |
T |
|
| Q |
217 |
tccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
316 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675738 |
tccttggcaagagcttcaatgggtgcttcataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
1675837 |
T |
|
| Q |
317 |
tcttaccactcccagacggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
416 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675838 |
tcttaccactccctgtcggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
1675937 |
T |
|
| Q |
417 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675938 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
1676037 |
T |
|
| Q |
517 |
atgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
616 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1676038 |
atgtgcctgaaagaaacaggtaaatcagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
1676137 |
T |
|
| Q |
617 |
ctatgaaattcaaagtatgatcctcatcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1676138 |
ctatgaaattcaaagtatgatcctcatcaacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcac |
1676237 |
T |
|
| Q |
717 |
ccaaaacggctcaacatat |
735 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1676238 |
ccaaaacggctcaacatat |
1676256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 17 - 735
Target Start/End: Original strand, 1682066 - 1682784
Alignment:
| Q |
17 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682066 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacc |
1682165 |
T |
|
| Q |
117 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1682166 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgctaatttaagaccacccccaaatttcttctcccaatcacgataccgt |
1682265 |
T |
|
| Q |
217 |
tccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682266 |
tccttggcaagagcttcaatgggtgctacataaacaacacgcatgacactatcagaccctttttgatgattcctcaaaattgcaaattctgcacatatag |
1682365 |
T |
|
| Q |
317 |
tcttaccactcccagacggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
416 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682366 |
tcttaccactcccggtcggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
1682465 |
T |
|
| Q |
417 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682466 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
1682565 |
T |
|
| Q |
517 |
atgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
616 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682566 |
atgtgcctgaaagaaacaggtaaaccagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
1682665 |
T |
|
| Q |
617 |
ctatgaaattcaaagtatgatcctcatcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1682666 |
ctatgaaattcaaagtatgatcctcatcaacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcac |
1682765 |
T |
|
| Q |
717 |
ccaaaacggctcaacatat |
735 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1682766 |
ccaaaacggctcaacatat |
1682784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 740
Target Start/End: Complemental strand, 29267835 - 29267112
Alignment:
| Q |
17 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
29267835 |
catcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccagcggcgggataaagcatcccacttctctggagtactaataataacctgacc |
29267736 |
T |
|
| Q |
117 |
tttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgt |
216 |
Q |
| |
|
||||||||||||||||||||| || | |||||||| ||||| || ||||| ||| ||||||||||| || ||||| |||||||||||| |||||| | |
|
|
| T |
29267735 |
tttctcaagcagtttcagatcagtagcggtttctccggttaactccactaccttcaacttaagaccacccccgaattttttctcccaatcacgatacctt |
29267636 |
T |
|
| Q |
217 |
tccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatag |
316 |
Q |
| |
|
||||||||||||||||||| || ||| | ||||||||| |||||||||||||| | | ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29267635 |
tccttggcaagagcttcaacgggtgcaatataaacaacgcgcatgacactatccggcaatttttgatggttcctcaaaattgcaaattctgcacatatag |
29267536 |
T |
|
| Q |
317 |
tcttaccactcccagacggagcagcaactaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatc |
416 |
Q |
| |
|
|||| |||||||||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
29267535 |
tcttgccactcccagttggagcagcaactaggacattgtcatcagaattatatagcactgtgaagacttgtgtctgtactgggttgaaatgcttaaaatc |
29267436 |
T |
|
| Q |
417 |
ctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaatt |
516 |
Q |
| |
|
||||||||||| |||||| || ||| || |||||| || || || ||||| ||||||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
29267435 |
ctgataaagagcttcatatgatggatttcttaaggcagtaactggaagtggttgcagatccaatagttcagtaggcggaggatacttttcaggtaaaatt |
29267336 |
T |
|
| Q |
517 |
atgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggta |
616 |
Q |
| |
|
| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| || | |
|
|
| T |
29267335 |
agatgcctgaaagaaacaggcagaacagtttgggatccaagccatttatcagaaacaacacggatgaagtattgaggaggaagaggctcgtatatcggca |
29267236 |
T |
|
| Q |
617 |
ctatgaaattcaaagtatgatcctcatcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcac |
716 |
Q |
| |
|
|| | ||||||||||| || ||||| ||||| || ||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
29267235 |
ctgtaaaattcaaagtgtggtcctcctcaatgtactgttttttcagcaaaaaatactcatgatgaaggatatattcaccatcattatcctccacaatcac |
29267136 |
T |
|
| Q |
717 |
ccaaaacggctcaacatatccatg |
740 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
29267135 |
ccagaacggctcaacatatccatg |
29267112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 78 - 740
Target Start/End: Original strand, 29185572 - 29186231
Alignment:
| Q |
78 |
agcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaattta |
177 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||| |||| | |||| || || |||| || || |||||| ||||||||||||| ||| || |
|
|
| T |
29185572 |
agcatcccatctctctggtgtactaacaataatctgtccttccctcagcaattccaaatctatttgtggatctccacttaattcaactaccttcaacttg |
29185671 |
T |
|
| Q |
178 |
agaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagaccctt |
277 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| | ||| ||| ||||||||||| |||| ||| || | |||||||||| ||||| || | | | | |
|
|
| T |
29185672 |
agaccattcccaaatttcttatcccagtcaaggtactgttgcttggcaagagtttcattgggtgtaagataaacaacaagcatgtcattgttggtattta |
29185771 |
T |
|
| Q |
278 |
ttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagacggagcagcaactaaggcattgtcatcagaattatacagagctgt |
377 |
Q |
| |
|
| | ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
29185772 |
tctgatgattcctcaaaattgcaaactctgcacatatagtcttgccactcccagttggagtggcaactaggacattgtcatcagaattatacagtactgt |
29185871 |
T |
|
| Q |
378 |
gaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggactttgtaaggctgtcacaggcagtggctgcagatcc |
477 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || ||| || |||||| || || || ||||| ||||||||| |
|
|
| T |
29185872 |
gaagacttgtgtctgtactggattgaaatgcttaaaatcctgataaagagcttcatatgatggatttcttaaggcagtaaccggaagtggttgcagatcc |
29185971 |
T |
|
| Q |
478 |
aacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaacagtttgggatccaagccacctatcagaaacaacac |
577 |
Q |
| |
|
| || |||||| |||||||| |||||||||||||| | || ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
29185972 |
agtagttcagta---ggaggatagttttcaggtaaaatgagatgactgcaagaaacaggtaaaactgtttgggatccaagccatttatcagaaacaacac |
29186068 |
T |
|
| Q |
578 |
ggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcatcaatatattgttttttcagcataaaatactcgtg |
677 |
Q |
| |
|
||||| ||||||||||||||||| | | ||||| ||| ||||||||||||| |||||||| | ||| | ||||||||||||| ||||||||| || |
|
|
| T |
29186069 |
ggatagagtattgaggaggaagacacttgtctattgacactgtgaaattcaaagtgtgatcctccttaatgtgctgttttttcagcaaaaaatactcatg |
29186168 |
T |
|
| Q |
678 |
atgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatg |
740 |
Q |
| |
|
||||||||| | | | ||||| |||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
29186169 |
atgaaggatctgtgcaccatctttatcctccataatcacccagaacggctcaacatatccatg |
29186231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 11698286 - 11698216
Alignment:
| Q |
273 |
cccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagacggagcagcaa |
343 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||| | ||||| ||||| |||| ||||||||||| |
|
|
| T |
11698286 |
ccctttttgatgatttctcaaaattgcaatttctgcacatgtggtctttccacttccagtcggagcagcaa |
11698216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 11698481 - 11698410
Alignment:
| Q |
69 |
gcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgt |
140 |
Q |
| |
|
||||||||||||||||||| ||| || ||| |||| |||||||| |||| ||||||||||||| |||||| |
|
|
| T |
11698481 |
gcgggataaagcatcccatatctgcggggtagtaatgataatctgtccttcttcaagcagtttcaaatctgt |
11698410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University