View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11222_high_10 (Length: 252)
Name: NF11222_high_10
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4590896 - 4591137
Alignment:
| Q |
1 |
ttttttgttggagtttctttttaagcttgacaagtacatggaagacgaatattattataacaatgattcaatctttaaagccgaggataaggtgttactg |
100 |
Q |
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| T |
4590896 |
ttttttgttggagtttctttttaagcttgacaagtacatggaagacgaaaattattataacaatgattcaatctttaaagccgaggataaggtgttactg |
4590995 |
T |
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| Q |
101 |
ttatctgttttaaacgatgttacaatgcttgagaaccaaattcccttcattattctcaagaagatatttaggaaggtatttcctgatggtagtgaacgca |
200 |
Q |
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| T |
4590996 |
ttatctgttttaaacgatgttacaatgcttgagaaccaaattcccttcattattctcaagaagatatttaggaaggtatttcctgatggtagtgaacgca |
4591095 |
T |
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| Q |
201 |
aagacgatcatcgtgtggctaatttagttcgtttagcctttg |
242 |
Q |
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| T |
4591096 |
aagacgatcatcgtgtggctaatttagttcgtttagcctttg |
4591137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 4554700 - 4554824
Alignment:
| Q |
99 |
tgttatctgttttaaacgatgttacaatgcttgagaaccaaattcccttcattattctcaagaagatatttaggaaggtatttcctgatggtagtgaacg |
198 |
Q |
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| T |
4554700 |
tgttgtctgttttaaatgatgtaaccatgcttgaaaattaaatccccttccttgttcttaagaaaatatataggaaggtattttctgttgatattgaaat |
4554799 |
T |
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| Q |
199 |
caaagacgatcatcgtgtggctaat |
223 |
Q |
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| T |
4554800 |
caaagatgatcatcgtgtagctaat |
4554824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 18521499 - 18521572
Alignment:
| Q |
113 |
aacgatgttacaatgcttgagaaccaaattcccttcattattctcaagaagatatttaggaaggtatttcctga |
186 |
Q |
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| T |
18521499 |
aacgatatcacaatgcttgagaaccaaatacccttcattgttctcaagaagttgtataggaaggttttccctga |
18521572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 14192651 - 14192688
Alignment:
| Q |
126 |
tgcttgagaaccaaattcccttcattattctcaagaag |
163 |
Q |
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| T |
14192651 |
tgcttgagaaccaaatacccttcattgttctcaagaag |
14192688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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