View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11222_high_2 (Length: 603)
Name: NF11222_high_2
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 593
Target Start/End: Complemental strand, 1668933 - 1668359
Alignment:
| Q |
19 |
atattggccaatatctcatggagttgtatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgc |
118 |
Q |
| |
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||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668933 |
atattggccaacatctcatggaaatatatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgc |
1668834 |
T |
|
| Q |
119 |
accttgtttagggtgctacaaacaaataaaacccatgtttgatcctctaaaatcatccacttacaataatatctcatgtgattctcccttgtgtcatcaa |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
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| T |
1668833 |
accttgtttaggttgctacaaacaaataaaacccatgtttgatcctctaaaatcatccacttacaataacatctcatgtgattctcctttgtgtcacaaa |
1668734 |
T |
|
| Q |
219 |
cttgacacaggtgtgtgttctcctgagaagcgttgcaattacacatatggctatggagataattctctaacaaagggtgttcttgcacaagacacggcta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668733 |
cttgacacaggtgtgtgttctcctgagaagcgttgcaattatacctatggctacggagataattctctaacaaagggtgttcttgcacaagacacggcta |
1668634 |
T |
|
| Q |
319 |
cctttacatcaaacacgggtaaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1668633 |
cctttacatcaaacacgggtaaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggggttttaatgaccatgagatgggtct |
1668534 |
T |
|
| Q |
419 |
cattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgat |
518 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668533 |
aattggtcttggaggaggaccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgat |
1668434 |
T |
|
| Q |
519 |
atcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttg |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
1668433 |
atcaaaatttcaagccgaatgagttttggaaaagggagtcaagtgttaggaaatggtgttgttactactcctttg |
1668359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Complemental strand, 1680469 - 1679920
Alignment:
| Q |
19 |
atattggccaatatctcatggagttgtatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| || |||||| ||||||||| |
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| T |
1680469 |
atattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacgggaagtgacctgatatgggtccaatgtgt |
1680370 |
T |
|
| Q |
119 |
accttgtttagggtgctacaaacaaataaaacccatgtttgatcctctaaaatcatccacttacaataatatctcatgtgattctcccttgtgtcatcaa |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||||||||||||||| || || |||| ||||||||||||||||||||| ||||| | || |
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| T |
1680369 |
accttgtttagggtgctacaaccaaataaaccctatgtttgatcctctaaaatcttcaacatacactaatatctcatgtgattctccattgtgctacaaa |
1680270 |
T |
|
| Q |
219 |
cttgacacaggtgtgtgttctcctgagaagcgttgcaattacacatatggctatggagataattctctaacaaagggtgttcttgcacaagacacggcta |
318 |
Q |
| |
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| | ||| ||||| ||||||||||||||| || ||| ||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||| || | || |
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| T |
1680269 |
ccttacataggtgagtgttctcctgagaaacggtgcgattacacctatggctatgcagatagttctctaaccaagggtgttcttgcacaagaaacagtta |
1680170 |
T |
|
| Q |
319 |
cctttacatcaaacacgggtaaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtct |
418 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||| | || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
1680169 |
ccttaacatcaaacacggggaaacctatttcccttcaaggaattctttttggttgtggacataacaacacagggaattttaatgaccatgagatgggtct |
1680070 |
T |
|
| Q |
419 |
cattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1680069 |
cattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgac |
1679970 |
T |
|
| Q |
519 |
atcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttagg |
568 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1679969 |
ataacaatttcaagccaaatgagttttggaaaagggagtgaagtgttagg |
1679920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 191 - 592
Target Start/End: Complemental strand, 1661499 - 1661098
Alignment:
| Q |
191 |
ctcatgtgattctcccttgtgtcatcaacttgacacaggtgtgtgttctcctgagaagcgttgcaattacacatatggctatggagataattctctaaca |
290 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
1661499 |
ctcatgtgattctcctttgtgtcacaaacttgacacaggtgtgtgttctcctgagaagcgttgcaattatacctatggctacggagataattctctaaca |
1661400 |
T |
|
| Q |
291 |
aagggtgttcttgcacaagacacggctacctttacatcaaacacgggtaaacctgtttccctttcaagatttctttttggttgtggacataacaacactg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1661399 |
aagggtgttcttgcacaagacacggctacctttacatcaaacacgggtaaacttgtttccctttcaagatttctttttggttgtggacataacaacactg |
1661300 |
T |
|
| Q |
391 |
ggagttttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttc |
490 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1661299 |
ggggttttaatgaccatgagatgggtctaattggtcttggaggaggaccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttc |
1661200 |
T |
|
| Q |
491 |
tcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcct |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||| ||| |
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|
| T |
1661199 |
tcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtcaagtgttaggggatggtgtggttactacacct |
1661100 |
T |
|
| Q |
591 |
tt |
592 |
Q |
| |
|
|| |
|
|
| T |
1661099 |
tt |
1661098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 577
Target Start/End: Complemental strand, 24547027 - 24546814
Alignment:
| Q |
364 |
tttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaatagg |
463 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||| |||||| | ||||||||| | || ||||||||| ||||||| |||||| |||||||||||||| |
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|
| T |
24547027 |
tttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaatagg |
24546928 |
T |
|
| Q |
464 |
tcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtg |
563 |
Q |
| |
|
| ||| ||||||||||| | ||||||||||||||||||||| |||| ||| | | ||| |||||| |||||||||||| ||||| |||||||| |
|
|
| T |
24546927 |
ttcttcttttggaggcaagatgttttctcaatgtttggttccattccacactaaccctagtattacaagcccaatgagttttggtaaaggaagtgaagta |
24546828 |
T |
|
| Q |
564 |
ttaggaaatggtgt |
577 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
24546827 |
ttggggaatggtgt |
24546814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 408 - 505
Target Start/End: Complemental strand, 15798097 - 15798000
Alignment:
| Q |
408 |
gagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcc |
505 |
Q |
| |
|
||||||||| | || ||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| |
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|
| T |
15798097 |
gagatgggtataataggtcttggaagaggacccttgtcacttgtttctcaaataggttcttcccttggaggcaacatgttttctcaatgtttggttcc |
15798000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 577
Target Start/End: Complemental strand, 15797980 - 15797928
Alignment:
| Q |
525 |
atttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgt |
577 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||||| || || |||||||| |
|
|
| T |
15797980 |
atttcaagcccaatgagttttggtaaaggaagtgaagtattggggaatggtgt |
15797928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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