View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11222_high_5 (Length: 392)
Name: NF11222_high_5
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 1573512 - 1573153
Alignment:
| Q |
13 |
tcatcaatccatccccacaaaatccttcnnnnnnncacttgatcatagaaagtctttgaagcatagtatattccatagtccaaaagcaacccaataccca |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1573512 |
tcattaatccatccccacaaaatccttctttttttcacttgatcatagaaagtctttgaagcatagtatattccatagtccaaaagcaacccaataccca |
1573413 |
T |
|
| Q |
113 |
cgtcctcgagtgggttatcaggaatccatgtatcattttcaataaaataagtcccaattgcataactatccactcttgtatcatccaaactagcctttaa |
212 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1573412 |
catcctcaagtgggttatcaggaatccatgtatcattttcaataaaataagtcccaattgcataactatccactcttgtatcatccaaactagcctttaa |
1573313 |
T |
|
| Q |
213 |
cacatgcttaacatgtggtccatttactgatgtgtccaaaccatttgacccgtttattgaaaccgggtaaaagtccacacattcccacatacccgtaccc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1573312 |
cacatgcttaacatgtggtccatttactgatgtgtccaaaccatttgacccgtttatagaaaccgggtaaaaatccacacattcccacatacccgtaccc |
1573213 |
T |
|
| Q |
313 |
ggaaccgcatgtaagtagttatcatttagttcaaaatttataaaatttgtggttttgtaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1573212 |
ggaaccgcatgtaagtagttatcatttagttcaaaatttataaaatttgtggttttgtaa |
1573153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University