View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11222_high_6 (Length: 304)
Name: NF11222_high_6
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 53401085 - 53400896
Alignment:
| Q |
18 |
acccccaccacaaaattcgaaggttcaacggaagtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcaccaaaactac |
117 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
53401085 |
acccccaccacaaaattcaaaggttcaacagaagtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccac |
53400986 |
T |
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| Q |
118 |
cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactccgccgtcgcaccaaagcaacaatctcatttcgattttga |
207 |
Q |
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| T |
53400985 |
cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactccgtcgtcgcaccaaagcaacaatctcatttcgattttga |
53400896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 53400712 - 53400648
Alignment:
| Q |
229 |
atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctat |
293 |
Q |
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| T |
53400712 |
atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctat |
53400648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 9962855 - 9962900
Alignment:
| Q |
116 |
accacctccaacgactgattccgccgtaaacgtccatcatttcccg |
161 |
Q |
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| T |
9962855 |
accacctccatcgactgattccgccgtagacggccatcatttcccg |
9962900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 7346425 - 7346613
Alignment:
| Q |
18 |
acccccaccacaaaattcgaaggttcaacggaagtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcaccaaaactac |
117 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
7346425 |
acccccaccacaaaattcgaaggttcaaccgaggtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccac |
7346524 |
T |
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| Q |
118 |
cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactccgccgtcgc---accaaagcaacaatctcatttcgatt |
203 |
Q |
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| T |
7346525 |
cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactctgccgttgcataaaaaaagcaacaatctcatttcgatt |
7346613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 7346812 - 7346877
Alignment:
| Q |
229 |
atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346812 |
atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctatg |
7346877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 7346619 - 7346656
Alignment:
| Q |
193 |
tcatttcgattttgagtttcttcctgatgattttcaat |
230 |
Q |
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| T |
7346619 |
tcatttcgattttgaatttcttcctgatgattttcaat |
7346656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 36519486 - 36519424
Alignment:
| Q |
229 |
atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctatg |
294 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
36519486 |
atagtaatatcaacagataatatcaacatttgcagataaa---agaaactacagtaatatcctatg |
36519424 |
T |
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