View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11222_high_7 (Length: 293)

Name: NF11222_high_7
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11222_high_7
NF11222_high_7
[»] chr3 (4 HSPs)
chr3 (7-250)||(5381378-5381621)
chr3 (7-250)||(13721145-13721388)
chr3 (88-167)||(24341603-24341682)
chr3 (248-279)||(5381242-5381273)
[»] scaffold0015 (2 HSPs)
scaffold0015 (7-250)||(27560-27803)
scaffold0015 (248-279)||(27424-27455)
[»] chr8 (2 HSPs)
chr8 (7-250)||(88286-88529)
chr8 (248-279)||(88634-88665)
[»] chr7 (4 HSPs)
chr7 (7-250)||(11713140-11713383)
chr7 (9-250)||(13162351-13162592)
chr7 (248-279)||(11713488-11713519)
chr7 (248-279)||(13162697-13162728)
[»] chr1 (4 HSPs)
chr1 (7-250)||(42377158-42377401)
chr1 (7-250)||(14474908-14475151)
chr1 (7-250)||(2795158-2795401)
chr1 (248-279)||(14474772-14474803)
[»] chr6 (2 HSPs)
chr6 (7-248)||(16775804-16776045)
chr6 (248-276)||(16775669-16775697)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 5381621 - 5381378
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381621 gagatgaaccagaaaaagaagaagttttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 5381522  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5381521 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggt 5381422  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  5381421 agttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 5381378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 13721388 - 13721145
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13721388 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgttgatcatggcgagtctctggtgatcagacgaagcctaca 13721289  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||    
T  13721288 cgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactactggaaaggtttgtgatgttataatagacagtggt 13721189  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  13721188 agttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 13721145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 24341682 - 24341603
Alignment:
Q  88 tgatcagacgaagcctacacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcacc 167  Q
    |||||| | |||| ||||||| ||||||||| |||||||||||||  ||||||||||| ||||| |||||||||||||||    
T  24341682 tgatcataggaaggctacacatgatgtcagcacaagaagagcattacttgaggaaaaacatttttcatactcgttgcacc 24341603  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 5381273 - 5381242
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgatgtc 279  Q
    ||||||||||||||||||||||||||||||||    
T  5381273 agaagtatcaagatcaagtttggtgtgatgtc 5381242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 27803 - 27560
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27803 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 27704  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  27703 cgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggt 27604  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  27603 agttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 27560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 27455 - 27424
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgatgtc 279  Q
    ||||||||||||||||||||||||||||||||    
T  27455 agaagtatcaagatcaagtttggtgtgatgtc 27424  T

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Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 88286 - 88529
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88286 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 88385  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  88386 cgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggt 88485  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  88486 agttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 88529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 88634 - 88665
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgatgtc 279  Q
    ||||||||||||||||||||||||||||||||    
T  88634 agaagtatcaagatcaagtttggtgtgatgtc 88665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 11713140 - 11713383
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11713140 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 11713239  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  11713240 cgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggt 11713339  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  11713340 agttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 11713383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 13162351 - 13162592
Alignment:
Q  9 gatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacaca 108  Q
    |||||||  |||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  13162351 gatgaacatgaaaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgttcagacgaagcctacacg 13162450  T
Q  109 cgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtag 208  Q
    |||||||||| ||||||||||||||||||| |||||| ||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  13162451 cgatgtcagcccaagaagagcattggttgacgaaaaacatcatccatactcgttgcaccactgctggaaaagtttgtgatattataatagatagtggtag 13162550  T
Q  209 ttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  13162551 ttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 13162592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 11713488 - 11713519
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgatgtc 279  Q
    ||||||||||||||||||||||||||||||||    
T  11713488 agaagtatcaagatcaagtttggtgtgatgtc 11713519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 13162697 - 13162728
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgatgtc 279  Q
    ||||||||||||||||||||||||||||||||    
T  13162697 agaagtatcaagatcaagtttggtgtgatgtc 13162728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 42377158 - 42377401
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42377158 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctaca 42377257  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42377258 cgcgatgtcagctcaagaagagtattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggt 42377357  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  42377358 agttgtgaaaatgtggtgtcgaactacatggtagagaagttaga 42377401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 14475151 - 14474908
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14475151 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 14475052  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  14475051 cgcgatgtcagctcaagaagagcattggttgagcaaaaacatttttcatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggt 14474952  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  14474951 agttgtgaaaatgtggtgtcgaactacatggtagagaatttaga 14474908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 2795401 - 2795158
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2795401 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctaca 2795302  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    | ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  2795301 cgcgatgtcagctcaagaagaacatttgttgaggaaaaacattttccatactcgttgcaccactgccggaaaagtttgtgatgttataatagacagtggt 2795202  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga 250  Q
    ||||||||||||||||||||||||||||||||  ||||||||||    
T  2795201 agttgtgaaaatgtggtgtcgaactacatggtggagaagttaga 2795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 14474803 - 14474772
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgatgtc 279  Q
    ||||||||||||||||||||||||||||||||    
T  14474803 agaagtatcaagatcaagtttggtgtgatgtc 14474772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 16776045 - 16775804
Alignment:
Q  7 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  16776045 gagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgaatctctagtgataagacgaagcctaca 16775946  T
Q  107 cacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggt 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16775945 cacgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggt 16775846  T
Q  207 agttgtgaaaatgtggtgtcgaactacatggtaaagaagtta 248  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  16775845 agttttgaaaatgtggtgtcgaactacatggtagagaagtta 16775804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 16775697 - 16775669
Alignment:
Q  248 agaagtatcaagatcaagtttggtgtgat 276  Q
    |||||||||||||||||||||||||||||    
T  16775697 agaagtatcaagatcaagtttggtgtgat 16775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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