View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11222_high_9 (Length: 253)
Name: NF11222_high_9
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 6622677 - 6622786
Alignment:
| Q |
129 |
caacagcttttgatgtaattgttattatttttacataacttatgtcaccgtttgagcactctaataataatatacaaaacctgcttcgacattcacttgc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6622677 |
caacagcttttgatgtaattgttattatttttacataacttatgtcaccgttggagcactctaataataatatacaaaatctgcttctacattcacttgc |
6622776 |
T |
|
| Q |
229 |
agtataaact |
238 |
Q |
| |
|
|||||||||| |
|
|
| T |
6622777 |
agtataaact |
6622786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6622548 - 6622595
Alignment:
| Q |
1 |
gtacataatcaaatttgatttcatcctaatgttgacatttctgtccaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6622548 |
gtacataatcaaatttgatttcatcctaatgttgacatttctgtccaa |
6622595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University