View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11222_low_10 (Length: 281)
Name: NF11222_low_10
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 4590918 - 4590706
Alignment:
| Q |
3 |
taaaaagaaactccaacaaaaaacaaccatccaccaacattattttggctaattcttgtgattctgttgtttcgcagatgttgttgttgctcccaccata |
102 |
Q |
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| T |
4590918 |
taaaaagaaactccaacaaaaaacaaccatccaccaacattattttggctaattcttgtgattctgttgtttcgcagatgttgttgttgctcccaccata |
4590819 |
T |
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| Q |
103 |
gctagcacaaatcactttatctaacctgagaatgtcatcgccacattcttttaaccttatctctaatgttctattttgttcttgtattggtgactcccgg |
202 |
Q |
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| T |
4590818 |
gctagcacaaatcactttatctaacctgagaatgtcatcgccacattcttttaaccttatatctaatgttctattttgttcttgtattggtgattcccgg |
4590719 |
T |
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| Q |
203 |
gtaaaaagttcgt |
215 |
Q |
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|||||||||||| |
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| T |
4590718 |
ataaaaagttcgt |
4590706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 4554548 - 4554488
Alignment:
| Q |
79 |
gatgttgttgttgctcccaccatagctagcacaaatcactttatctaacctgagaatgtca |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
4554548 |
gatgttgttgttgctcccaccatagctagcacaaatcactttatctaacttaagaatgtca |
4554488 |
T |
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