View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11222_low_13 (Length: 249)
Name: NF11222_low_13
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1668337 - 1668126
Alignment:
| Q |
1 |
tcatattttgtttcattacgaggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattccggaacac |
100 |
Q |
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| T |
1668337 |
tcatattttgttacattactaggtattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattcaggaacac |
1668238 |
T |
|
| Q |
101 |
caccaattctattaccacaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaactttgggtac |
200 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1668237 |
caccaattctattgccgcaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaagtttgggtac |
1668138 |
T |
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| Q |
201 |
tcaactttgtta |
212 |
Q |
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|||||||||||| |
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| T |
1668137 |
tcaactttgtta |
1668126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1679870 - 1679662
Alignment:
| Q |
1 |
tcatattttgtttcattacgaggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattccggaacac |
100 |
Q |
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||||||| |||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
1679870 |
tcatattatgttacattactaggtattagtgtggaagacacatatcttcccatgaatagtactattgaaaagggtaacatgttggttgattcgggaacac |
1679771 |
T |
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| Q |
101 |
caccaattctattaccacaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaactttgggtac |
200 |
Q |
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| T |
1679770 |
caccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaaagttccattggaacccattacggatgatccaagtttgggtcc |
1679671 |
T |
|
| Q |
201 |
tcaactttg |
209 |
Q |
| |
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||||||||| |
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| T |
1679670 |
tcaactttg |
1679662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1661072 - 1660864
Alignment:
| Q |
1 |
tcatattttgtttcattacgaggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattccggaacac |
100 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
1661072 |
tcatattttgttacattactaggtattagtgtggaagacacatatcttcccatgaatagtactattgaaaagggtaacatgttggttgattcgggaacac |
1660973 |
T |
|
| Q |
101 |
caccaattctattaccacaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaactttgggtac |
200 |
Q |
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| T |
1660972 |
caccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaatgttccattagaactcattacaaatgatccaagtttgggtcc |
1660873 |
T |
|
| Q |
201 |
tcaactttg |
209 |
Q |
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||||||||| |
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| T |
1660872 |
tcaactttg |
1660864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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