View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11222_low_14 (Length: 228)

Name: NF11222_low_14
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11222_low_14
NF11222_low_14
[»] chr8 (5 HSPs)
chr8 (130-220)||(24829972-24830061)
chr8 (92-157)||(6911040-6911105)
chr8 (83-157)||(14999182-14999257)
chr8 (92-157)||(15009083-15009148)
chr8 (36-77)||(22781296-22781337)
[»] chr5 (7 HSPs)
chr5 (92-157)||(31193976-31194041)
chr5 (92-157)||(31194190-31194255)
chr5 (92-157)||(14076894-14076959)
chr5 (115-157)||(32347145-32347187)
chr5 (92-157)||(17370078-17370143)
chr5 (100-156)||(36955315-36955371)
chr5 (92-156)||(36955519-36955583)
[»] chr4 (7 HSPs)
chr4 (92-157)||(17914973-17915038)
chr4 (30-80)||(5466090-5466140)
chr4 (36-77)||(19037738-19037779)
chr4 (92-157)||(54316054-54316119)
chr4 (115-157)||(32591172-32591214)
chr4 (92-157)||(7061983-7062048)
chr4 (85-157)||(50544267-50544340)
[»] chr3 (11 HSPs)
chr3 (92-157)||(43797363-43797428)
chr3 (85-157)||(38499830-38499902)
chr3 (85-157)||(53197201-53197273)
chr3 (85-157)||(38500039-38500111)
chr3 (92-157)||(4041408-4041473)
chr3 (85-157)||(8799328-8799401)
chr3 (36-77)||(46883656-46883697)
chr3 (85-138)||(8657429-8657483)
chr3 (36-73)||(8657415-8657452)
chr3 (36-77)||(8799560-8799601)
chr3 (85-145)||(43797859-43797919)
[»] chr2 (11 HSPs)
chr2 (84-157)||(4371465-4371539)
chr2 (92-157)||(22563221-22563286)
chr2 (85-157)||(12232574-12232646)
chr2 (85-157)||(21265574-21265646)
chr2 (85-157)||(34645558-34645630)
chr2 (84-157)||(21265778-21265852)
chr2 (92-145)||(17200303-17200356)
chr2 (120-157)||(20296669-20296706)
chr2 (92-157)||(22563435-22563500)
chr2 (48-80)||(156976-157008)
chr2 (48-80)||(17200106-17200138)
[»] chr1 (6 HSPs)
chr1 (92-157)||(34622550-34622615)
chr1 (85-157)||(33156672-33156744)
chr1 (92-151)||(24883193-24883252)
chr1 (115-157)||(33400866-33400908)
chr1 (92-157)||(3385536-3385601)
chr1 (92-157)||(24882982-24883047)
[»] chr7 (6 HSPs)
chr7 (92-151)||(35207195-35207254)
chr7 (92-157)||(19318373-19318438)
chr7 (100-157)||(19318452-19318509)
chr7 (92-157)||(35207400-35207465)
chr7 (94-157)||(2834426-2834489)
chr7 (100-157)||(39983870-39983927)
[»] chr6 (2 HSPs)
chr6 (92-157)||(22748599-22748664)
chr6 (92-157)||(22748813-22748878)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 24829972 - 24830061
Alignment:
Q  130 gtaaatggaacttagcctaaatcgagcagttattcatcatttatgtgaattgtagtattatcaagtatacacttattatattgaaatcctt 220  Q
    ||||||||| |||||| ||||| |||  |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24829972 gtaaatggagcttagcttaaatagagg-gttactcatcatttatgtgaattgtactattatcaagtatacacttattatattgaaatcctt 24830061  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 6911105 - 6911040
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||  |  |||||| ||||||||||||||||| |||||||||||| |||||    
T  6911105 ttttttgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagca 6911040  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 14999257 - 14999182
Alignment:
Q  83 tattagatatttt-ttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||| ||| || |||||||||||| |  |||||| |||||||||||||| || |||||||||||| |||||    
T  14999257 tattagatactttattgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagca 14999182  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 15009083 - 15009148
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||  |  |||||| ||||||||||||||| | |||||||||||| |||||    
T  15009083 ttttttgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagca 15009148  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 22781337 - 22781296
Alignment:
Q  36 gagttcgggtatgctctatttactccatttaggatttggatg 77  Q
    |||||||||||||||| |||||||| ||||||| ||||||||    
T  22781337 gagttcgggtatgctccatttactcaatttagggtttggatg 22781296  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 31194041 - 31193976
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||||||||||||||||||||| |||||||||||| |||||    
T  31194041 ttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagca 31193976  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 31194190 - 31194255
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||||||||||||||||||||| |||||||||||| |||||    
T  31194190 ttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagca 31194255  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 14076894 - 14076959
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| |||||||||||||| ||||||||||||||| |||||    
T  14076894 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagca 14076959  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 32347145 - 32347187
Alignment:
Q  115 caaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||||||||| |||| |||||||||||| |||||    
T  32347145 caaaccttaaatggagtaattggagcttagcctaaatggagca 32347187  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 17370143 - 17370078
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| |||||||||||||||||  ||||| ||||| |||||    
T  17370143 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagca 17370078  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 36955371 - 36955315
Alignment:
Q  100 cacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagc 156  Q
    ||||||||||| |  |||||| ||||||||||||||| | |||||||||||| ||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagc 36955315  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 36955519 - 36955583
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagc 156  Q
    |||||| |||||||||||| |  |||||| ||||| |||||||| || |||||||||||| ||||    
T  36955519 ttttttgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagc 36955583  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 17914973 - 17915038
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  ||||| ||||||||||||||||||||||||||||||| |||||    
T  17914973 ttttttgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagca 17915038  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 5466140 - 5466090
Alignment:
Q  30 tttttagagttcgggtatgctctatttactccatttaggatttggatgtaa 80  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||||||    
T  5466140 tttttggagttcgggtatgctctatttactctatttagggtttggatgtaa 5466090  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 19037738 - 19037779
Alignment:
Q  36 gagttcgggtatgctctatttactccatttaggatttggatg 77  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  19037738 gagttcgggtatgctccatttactccatttaagatttggatg 19037779  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 54316054 - 54316119
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| |||||||||||||| || |||||||||||| |||||    
T  54316054 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagca 54316119  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 32591214 - 32591172
Alignment:
Q  115 caaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||||||||||||||||||||| |||| ||||||| |||||    
T  32591214 caaaccttaaatggagtaaatggagcttaacctaaatagagca 32591172  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 7062048 - 7061983
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| |||||||||||||| ||  ||||||||||| |||||    
T  7062048 ttttttgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagca 7061983  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 50544340 - 50544267
Alignment:
Q  85 ttagatat-tttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||||| ||||| |||||||||||| |  |||||| ||||| || |||||||| |||||||||||| |||||    
T  50544340 ttagatatctttttgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagca 50544267  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 43797428 - 43797363
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||||||||||||||||||||| |||||||||||| |||||    
T  43797428 ttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagca 43797363  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 38499902 - 38499830
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||| |||||||||||| |  |||||| ||||||||||||||||| |||||||||||| |||||    
T  38499902 ttagattttttttgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagca 38499830  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 53197201 - 53197273
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||| |||||||||||| |  |||||| ||||||||||||||| | |||||||||||| |||||    
T  53197201 ttagatattttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagca 53197273  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 38500039 - 38500111
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||| |||||||||||  |  |||||| ||| ||||||||||||| |||||||||||| |||||    
T  38500039 ttagatatttttttccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagca 38500111  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 4041408 - 4041473
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| ||||||||||||||| | |||||||||||| |||||    
T  4041408 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagca 4041473  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 8799401 - 8799328
Alignment:
Q  85 ttagatat-tttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||||| ||||| |||||||||||| |  |||||| ||||||||||||||||| | |||||||||| |||||    
T  8799401 ttagatatatttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagca 8799328  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 46883697 - 46883656
Alignment:
Q  36 gagttcgggtatgctctatttactccatttaggatttggatg 77  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  46883697 gagttcgggtatgctccatttactccatttagggtttggatg 46883656  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 8657483 - 8657429
Alignment:
Q  85 ttagatattt-tttaccacatgtcttggactcaaaccttaaatggagtaaatgga 138  Q
    |||||||||| ||| |||||||||||| | ||||||| |||||||||||||||||    
T  8657483 ttagatatttgtttgccacatgtcttgcattcaaaccctaaatggagtaaatgga 8657429  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 8657415 - 8657452
Alignment:
Q  36 gagttcgggtatgctctatttactccatttaggatttg 73  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  8657415 gagttcgggtatgctccatttactccatttagggtttg 8657452  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 8799601 - 8799560
Alignment:
Q  36 gagttcgggtatgctctatttactccatttaggatttggatg 77  Q
    |||||||||||||||| |||||||||||||||| ||| ||||    
T  8799601 gagttcgggtatgctccatttactccatttagggtttagatg 8799560  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 43797859 - 43797919
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagc 145  Q
    ||||||||||||| |||||||||||| |  ||| || |||||||||||||| | |||||||    
T  43797859 ttagatattttttgccacatgtcttgcatccaagccctaaatggagtaaatagcacttagc 43797919  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 4371539 - 4371465
Alignment:
Q  84 attagatatttttta-ccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||||  |||||||||||| |  |||||| ||||||||||||||||| |||||||||||| |||||    
T  4371539 attagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagca 4371465  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 22563286 - 22563221
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| ||||||||||||||||| |||||||||||| |||||    
T  22563286 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagca 22563221  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 12232646 - 12232574
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||| |||||||||||  |  |||||| ||||| ||||||||||| |||||||||||| |||||    
T  12232646 ttagatattttttgccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagca 12232574  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 21265646 - 21265574
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||| |||||||||||| |  |||||| |||||||||||||| || ||||| |||||| |||||    
T  21265646 ttagatattttttgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagca 21265574  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 34645630 - 34645558
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||| |||||||||||| |  || ||| |||||||||||||| ||||||| ||||||| |||||    
T  34645630 ttagatattttttgccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagca 34645558  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 21265778 - 21265852
Alignment:
Q  84 attagata-ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||||| |||||| |||||||||||| |  |||||| ||||| ||||||||||| |||||| ||||| |||||    
T  21265778 attagatacttttttgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagca 21265852  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 17200303 - 17200356
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagc 145  Q
    |||||| |||||||||||  |  |||||||||||||||||||||||| ||||||    
T  17200303 ttttttgccacatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 20296669 - 20296706
Alignment:
Q  120 cttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  20296669 cttaaatggagtaaatggagcttagcctaaatagagca 20296706  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 22563435 - 22563500
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||| | |||||||||||||||||  ||||||||||| |||||    
T  22563435 ttttttgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagca 22563500  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 156976 - 157008
Alignment:
Q  48 gctctatttactccatttaggatttggatgtaa 80  Q
    |||| ||||||||||||||||||||||||||||    
T  156976 gctccatttactccatttaggatttggatgtaa 157008  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 17200106 - 17200138
Alignment:
Q  48 gctctatttactccatttaggatttggatgtaa 80  Q
    |||| ||||||||||||||||||||||||||||    
T  17200106 gctccatttactccatttaggatttggatgtaa 17200138  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 34622550 - 34622615
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| | |||||||||||||||||||| |||| ||||| |||||| |||||    
T  34622550 ttttttgccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagca 34622615  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 33156672 - 33156744
Alignment:
Q  85 ttagatattttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||| |||||||||||| |  |||||| ||||||||||||||  | |||||||||||| |||||    
T  33156672 ttagattttttttgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagca 33156744  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 24883193 - 24883252
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaat 151  Q
    |||||| |||||| ||||| |  |||||| ||||||||||||||||| ||||||||||||    
T  24883193 ttttttgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 24883252  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 33400908 - 33400866
Alignment:
Q  115 caaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||||||||||||||||||||| |||||| ||||| |||||    
T  33400908 caaaccttaaatggagtaaatggagcttagcttaaatggagca 33400866  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 3385536 - 3385601
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||| ||||  |  |||||| ||||||||||||||||| ||| |||||||| |||||    
T  3385536 ttttttaccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagca 3385601  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 24883047 - 24882982
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||| ||||||| |  |||||| |||||||||||||||||  ||||||||||| |||||    
T  24883047 ttttttgccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagca 24882982  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 35207254 - 35207195
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaat 151  Q
    |||||| |||||||||||| |  |||||| ||||||||||||||||| ||||||||||||    
T  35207254 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 35207195  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 19318373 - 19318438
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |   ||||||||||||||||||||| | |||||||||||| |||||    
T  19318373 ttttttgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagca 19318438  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 19318452 - 19318509
Alignment:
Q  100 cacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||| |   ||||||||||||||||||||||| |||||||||||| |||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagca 19318509  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 35207400 - 35207465
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||||| |||||||||||||||||  ||||||||||| |||||    
T  35207400 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagca 35207465  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 2834426 - 2834489
Alignment:
Q  94 ttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||| |||||||| ||| |  |||||| |||||||| ||||||||||||||||||||| |||||    
T  2834426 ttttgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagca 2834489  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 39983870 - 39983927
Alignment:
Q  100 cacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||| |  |||||| ||||||||||||||||| ||| |||||||| |||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagca 39983927  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 22748664 - 22748599
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    |||||| |||||||||||| |  |||| ||||||||||||||||||| | |||||||||| |||||    
T  22748664 ttttttgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagca 22748599  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 22748813 - 22748878
Alignment:
Q  92 ttttttaccacatgtcttggactcaaaccttaaatggagtaaatggaacttagcctaaatcgagca 157  Q
    ||||||||||||||||||  |  |||| | ||||||||||||||||| ||||| |||||| |||||    
T  22748813 ttttttaccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagca 22748878  T

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