View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11222_low_3 (Length: 506)

Name: NF11222_low_3
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11222_low_3
NF11222_low_3
[»] chr4 (7 HSPs)
chr4 (6-357)||(45858795-45859142)
chr4 (11-359)||(45876731-45877069)
chr4 (24-155)||(56208539-56208670)
chr4 (17-161)||(47293456-47293600)
chr4 (23-161)||(55705881-55706019)
chr4 (28-136)||(54304249-54304357)
chr4 (267-349)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (16-161)||(35854542-35854687)
chr5 (85-161)||(35802504-35802580)
chr5 (28-159)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (25-166)||(24357450-24357591)
chr2 (249-356)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (23-162)||(7972083-7972222)
chr8 (28-161)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 6 - 357
Target Start/End: Original strand, 45858795 - 45859142
Alignment:
Q  6 ttcttaaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgaga 105  Q
    |||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  45858795 ttctgaaatcaacctgattatcttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgaga 45858894  T
Q  106 tactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatat 205  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||    |||||||    
T  45858895 tactgcatccttaccggtccaaaccctctcctgtgcagcctcttccatcttgtctacctagtgacaggacagtagcggtaagtaactat----tggatat 45858990  T
Q  206 acgagaaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattg 305  Q
    || || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||  || || ||||||||||||||||||||    
T  45858991 acaaggaggaagaacataaagcatggaaaatagatttttcttaaataaatttaaaacatacagtcatagctcgggaaagggcagctttgtctcgaaattg 45859090  T
Q  306 tttataaacattttctgttctcttggcaaatagcactgcttcatgtggcctg 357  Q
    ||||||| |||| | |||||||||||||||||||  ||||||||||||||||    
T  45859091 tttataagcattctgtgttctcttggcaaatagctttgcttcatgtggcctg 45859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 45876731 - 45877069
Alignment:
Q  11 aaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactg 110  Q
    ||||||||||| ||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  45876731 aaatcaacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctg 45876830  T
Q  111 catccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgag 210  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||  || |||||||    ||||||||    |||| |||  ||    
T  45876831 catccttaccggtccaaaccctcccttgtgcaacctcttccatcttgtctacctagcgacgggatagtagct----gtaactat----tggacatagaag 45876922  T
Q  211 aaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttat 310  Q
      ||||||||||||||||  |||||||| ||||||||  || |||||||||||||||||||||||||| || | ||| || || || |||||||||||||    
T  45876923 ggggaagaacagaaaaca--gaaaatagctttttcttgtatgaatttaaaacatacagtcattgatctggaaaaagccgccttatcacgaaattgtttat 45877020  T
Q  311 aaacattttctgttctcttggcaaatagcactgcttcatgtggcctgca 359  Q
    ||| ||| | ||    ||||||||||||| |||||||||||||||||||    
T  45877021 aaaaattctgtgcagacttggcaaatagctctgcttcatgtggcctgca 45877069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 56208539 - 56208670
Alignment:
Q  24 tgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggt 123  Q
    |||||||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  56208539 tgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggt 56208638  T
Q  124 ccaaaccctcccctgtgcaaccttttccatct 155  Q
    | ||||||||||||||||||||| ||||||||    
T  56208639 ctaaaccctcccctgtgcaacctcttccatct 56208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 47293600 - 47293456
Alignment:
Q  17 acctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcct 116  Q
    ||||| |||| ||||||||||| |||||||| ||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  47293600 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 47293501  T
Q  117 taccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 161  Q
    ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  47293500 tactggtccaaatccttccctgtgcaacctcttccatcttgtcta 47293456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 55706019 - 55705881
Alignment:
Q  23 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 122  Q
    |||| |||||||||||  || |||| ||| |  |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  55706019 ctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccgg 55705920  T
Q  123 tccaaaccctcccctgtgcaaccttttccatcttgtcta 161  Q
    ||||||||||||| || ||||||| ||||||||||||||    
T  55705919 tccaaaccctcccatgcgcaacctcttccatcttgtcta 55705881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 54304357 - 54304249
Alignment:
Q  28 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 127  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||    
T  54304357 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 54304258  T
Q  128 accctcccc 136  Q
    ||| |||||    
T  54304257 accttcccc 54304249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 56208678 - 56208760
Alignment:
Q  267 agtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttcat 349  Q
    |||||||||||| || ||||| || || ||||||||||||||||||| || || || |||||| ||||||||| |||||||||    
T  56208678 agtcattgatctggaaagagccgcattatctcgaaattgtttataaatatgttgtgctctcttagcaaatagctctgcttcat 56208760  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 35854687 - 35854542
Alignment:
Q  16 aacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcc 115  Q
    |||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||    
T  35854687 aacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcc 35854588  T
Q  116 ttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 161  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35854587 ttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  85 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 161  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 10521434 - 10521303
Alignment:
Q  28 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 127  Q
    ||||||||||| |||||| | ||| || |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||    
T  10521434 ttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaa 10521335  T
Q  128 accctcccctgtgcaaccttttccatcttgtc 159  Q
    | |||||  |||| || || || |||||||||    
T  10521334 atcctcctatgtggaatctctttcatcttgtc 10521303  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 24357591 - 24357450
Alignment:
Q  25 gtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtc 124  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| || || |  |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  24357591 gtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtc 24357492  T
Q  125 caaaccctcccctgtgcaaccttttccatcttgtctacctag 166  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357491 caaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 356
Target Start/End: Complemental strand, 24357376 - 24357269
Alignment:
Q  249 aataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttca 348  Q
    |||||||||| ||||||||||||| ||||| || | ||| || ||||||||||||||||||||  |||| | ||     |||||||||||| ||||||||    
T  24357376 aataaatttagaacatacagtcatagatctggataaagctgccttgtctcgaaattgtttatatgcattctgtgcagatttggcaaatagctctgcttca 24357277  T
Q  349 tgtggcct 356  Q
    | ||||||    
T  24357276 tctggcct 24357269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 7972083 - 7972222
Alignment:
Q  23 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 122  Q
    |||| |||||| | || |||||||| ||| ||||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| |||||||    
T  7972083 ctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccgg 7972182  T
Q  123 tccaaaccctcccctgtgcaaccttttccatcttgtctac 162  Q
    |||||| ||||| ||||||||||| |||||||||||||||    
T  7972183 tccaaatcctcctctgtgcaacctcttccatcttgtctac 7972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 7961718 - 7961851
Alignment:
Q  28 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 127  Q
    |||||| |||| |||||||| ||| ||||||||||||||  | ||||  |||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||    
T  7961718 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaa 7961817  T
Q  128 accctcccctgtgcaaccttttccatcttgtcta 161  Q
    |  ||||| |||||||||| ||||||||||||||    
T  7961818 attctcccttgtgcaacctcttccatcttgtcta 7961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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