View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11222_low_4 (Length: 496)
Name: NF11222_low_4
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 39878006 - 39877533
Alignment:
| Q |
18 |
agatcagagctactaaatgtgtatgtttttatttatttatatattgaaactttaaaagtttacannnnnnnacatggtcattgtttatgattaaaccttg |
117 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39878006 |
agatcagagctactgaatgtgtatgtttttatttatttatatattgaaactttaaaagtttacatttttttacatggtcattgtttatgattaaaccttg |
39877907 |
T |
|
| Q |
118 |
aaatgtctattttgaatattttcacgggtattatttgaataatgtcctagaaatttttcaaagctaaaggttgaagcttttatcttttcttcccaggatt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877906 |
aaatgtctattttgaatattttcacgggtattatttgaataatgtcctagaaatttttcaaagctaaaggttgaagcttttatcttttcttcccaggatt |
39877807 |
T |
|
| Q |
218 |
ttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877806 |
ttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatg |
39877707 |
T |
|
| Q |
318 |
atgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877706 |
atgaaggacgcttcaattttaaatggctcacatcattcgataaaaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatga |
39877607 |
T |
|
| Q |
418 |
atatgttcctttatcagcaaggttgtctaagaagggataccatcattaacaaactccagattgtcaggcctttg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39877606 |
tgatgttcctttatcagcaaggttgtctaagaagggataccatcattaacaaactccagattgtcaggcctttg |
39877533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 89 - 416
Target Start/End: Complemental strand, 39423181 - 39422853
Alignment:
| Q |
89 |
acatggtcattgttt-atgattaaaccttgaaatgtctattttgaatattttcacgggtattatttgaataatgtcctagaaatttttcaaagctaaagg |
187 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||| | |
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|
| T |
39423181 |
acatggtcattgttttatgattaaaacttgaaatgtctattttgagtattttcatgggtattatttgatcaatgtcctagaaatttttcaaatctaaaag |
39423082 |
T |
|
| Q |
188 |
ttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggctt |
287 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
39423081 |
ttgaagcttttaacctttgttcccaggattttgaggtgtttgtgttatagctgagagtttaaagttttctatagttcaatcatggatgttgttgaggctt |
39422982 |
T |
|
| Q |
288 |
ctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtga |
387 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| || | |
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| T |
39422981 |
ctgataacccaaatttatgtgttggtgatgatgaaggacacttcaattttaaatggcacacatcattcgataaaaaaacatcgcattcagattcttgtaa |
39422882 |
T |
|
| Q |
388 |
agactatgaatctgaagatgatgatgatg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
39422881 |
agactatgaatctgaagatgatgatgatg |
39422853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 146 - 451
Target Start/End: Complemental strand, 39416970 - 39416668
Alignment:
| Q |
146 |
tattatttgaataatgtcctagaaatttttca-aagctaaaggttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagag |
244 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| || | ||||| | ||||| |
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|
| T |
39416970 |
tattattttattaaagtcctagaaatttttcactccctaaaagttgaaggttttgtcttttcttcacaggattttgaggtgtaaatttaatatccgagag |
39416871 |
T |
|
| Q |
245 |
tttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggc |
344 |
Q |
| |
|
|||| || ||||||||||| ||| ||||||||||| ||||||||| |||| |||| ||| ||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
39416870 |
tttacag-tttctatagttcaatgatggatgttgttgaggcttctgataagccaattttttgtgttggtgatgatgaagagcacttcaattttaaatggc |
39416772 |
T |
|
| Q |
345 |
tcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggttgtc |
444 |
Q |
| |
|
| ||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||| | |
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|
| T |
39416771 |
ttgcatcattcgataaaaaaacatcgcattcagcttcacgtgaagactttgaatctgatgatgatgatgatg---atgttcctttgtcagcaaggtttgc |
39416675 |
T |
|
| Q |
445 |
taagaag |
451 |
Q |
| |
|
||||||| |
|
|
| T |
39416674 |
taagaag |
39416668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 145 - 412
Target Start/End: Complemental strand, 39474851 - 39474588
Alignment:
| Q |
145 |
gtattatttgaataatgtcctagaaatttttcaaagctaaaggttgaagcttttatctttt-cttcccaggattttgaggggtttgtgtaatagctgaga |
243 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || ||||| | |||||| |||| ||||||||||||| || | ||| | ||| ||| ||| |
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|
| T |
39474851 |
gtattatttgattaatgtcctggaaatttttcaaagcttaaagttgacgtttttatttttttcttcccaggatttcgacgtgttcat-taagagccaaga |
39474753 |
T |
|
| Q |
244 |
gtttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatgg |
343 |
Q |
| |
|
||||| ||||| |||||||| ||| |||||| ||| |||||||| |||| |||||||| |||||||| |||||||||| || || |||||||||||| |
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|
| T |
39474752 |
gtttacagttt-ctatagttcaataatggatattg---aggcttctgataagccaaatttttgtgttggagatgatgaagaacatttaaattttaaatgg |
39474657 |
T |
|
| Q |
344 |
ctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgat |
412 |
Q |
| |
|
|| |||||||||||| ||| ||||||| || |||| |||||| ||||||||||||||||||| |
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|
| T |
39474656 |
ctaacatcattcgataaaagtacattgcattcaccttttcgtcaagactttgaatctgaagatgatgat |
39474588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 253 - 416
Target Start/End: Complemental strand, 39488540 - 39488380
Alignment:
| Q |
253 |
tttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatca |
352 |
Q |
| |
|
|||||||| |||||| |||||| ||| | ||||||||||| | ||| || |||| |||||||||||||| || ||| ||||||||||||||| ||||| |
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|
| T |
39488540 |
tttctatacttgaatgatggattttg---aagcttctaataagctaaaattttgtggtggtgatgatgaagaacacttaaattttaaatggctcgcatca |
39488444 |
T |
|
| Q |
353 |
ttcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
416 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39488443 |
tttgataaaaaaacatcgcattcagcttctcgtgaagactatgaatctgaagatgatgatgatg |
39488380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 173 - 358
Target Start/End: Original strand, 39135787 - 39135970
Alignment:
| Q |
173 |
tttcaaagctaaaggttgaa-gcttttatctttt-cttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcat |
270 |
Q |
| |
|
|||||||||| ||||||||| | |||||| |||| ||||||||||| |||||| ||| |||||| |||||||| ||| ||||| |||||||||||| || |
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|
| T |
39135787 |
tttcaaagctgaaggttgaaagtttttatttttttcttcccaggatgttgaggtgttcttgtaattgctgagaggttatagttt-ctatagttgaatgat |
39135885 |
T |
|
| Q |
271 |
ggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatcattcgat |
358 |
Q |
| |
|
|||| |||| |||||| || |||| ||||| || |||||||||||||| ||| ||| |||||||||||||| ||||||||||| |
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|
| T |
39135886 |
ggatattgttgaggctactcataagccaaagttttgtgttggtgatgaagaata---cttaaattttaaatggcttgcatcattcgat |
39135970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 416
Target Start/End: Original strand, 39457627 - 39457872
Alignment:
| Q |
171 |
tttttcaaagctaaaggttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcat |
270 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| | | | |||| ||||||||||||||| || |
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|
| T |
39457627 |
tttttcaaagctaaaagttgaagcttttatcttttcttcccaggattttgaggtgttcatgtaataccccaaaagttaacaatttctatagttgaatgat |
39457726 |
T |
|
| Q |
271 |
ggatgttgtcgaggcttctaataacccaaatttatgtgt---tggtgatgatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnnca |
367 |
Q |
| |
|
|| | || ||||||||| |||| |||| || ||||| || ||||||||||| | ||||||||||||||||| ||||||| ||| || |
|
|
| T |
39457727 |
gggtttt---gaggcttctgataagtcaaagttttgtgttcgtgatgatgatgaagaaactttcaattttaaatggcttgcatcatttgataaaaaaaca |
39457823 |
T |
|
| Q |
368 |
tcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
416 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
39457824 |
tcgcattcatcttccactgaagactttgaatctgaaggtgatggtgatg |
39457872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 441
Target Start/End: Original strand, 39151416 - 39151598
Alignment:
| Q |
253 |
tttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatca |
352 |
Q |
| |
|
||||| ||||||||| |||||| ||| | ||||||||||| | ||| || ||||| ||||||||||||||||||||||| |||||| || | |||| |
|
|
| T |
39151416 |
tttctgtagttgaatgatggattttg---aagcttctaataagctaaaattttgtgtaggtgatgatgaaggacgcttcaactttaaacggattgcatcg |
39151512 |
T |
|
| Q |
353 |
ttcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggtt |
441 |
Q |
| |
|
| ||| |||| ||||||| |||||| ||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||| |
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|
| T |
39151513 |
tgcgagataaaaacatctcattcagcttctcgcgaagactttgaatctgaagatgaagatgatg---atgttcctttgtcagcaaggtt |
39151598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 39469846 - 39469893
Alignment:
| Q |
307 |
tgttggtgatgatgaaggacgcttcaattttaaatggctcacatcatt |
354 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
39469846 |
tgttggtgatgatgaagaactcttgaattttaaatggctcacatcatt |
39469893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 146 - 317
Target Start/End: Original strand, 19806145 - 19806312
Alignment:
| Q |
146 |
tattatttgaataatgtcctagaaatttttcaaagctaaa-ggttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagag |
244 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||| |||| ||||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
19806145 |
tattatttgattaatgtcctggaattttttcaaagttaaaaggttgaat-ttttattttttcttcccaggattttgaggtgttcttgtaattgctgagaa |
19806243 |
T |
|
| Q |
245 |
tttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatg |
317 |
Q |
| |
|
||| || ||||||||||||| ||||||||||| ||||||| | |||| ||||| || ||||||||||||| |
|
|
| T |
19806244 |
gttacag-tttctatagttga---atggatgttgttgaggcttttgataagccaaagttctgtgttggtgatg |
19806312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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