View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11222_low_5 (Length: 395)
Name: NF11222_low_5
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 1414401 - 1414021
Alignment:
| Q |
1 |
tcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaatta |
100 |
Q |
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| T |
1414401 |
tcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaatta |
1414302 |
T |
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| Q |
101 |
acctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaacgacaattttgtcaaaacgtaaatttgacataatgtg |
200 |
Q |
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| T |
1414301 |
acctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaatgacaattttgtcaaaacgtaaatttgacataatgtg |
1414202 |
T |
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| Q |
201 |
tttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagnnnnnnntgcctaacaatagctttgagac |
300 |
Q |
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| T |
1414201 |
tttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagaaaaaaatgcctaacaatagctttgagac |
1414102 |
T |
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| Q |
301 |
acgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
381 |
Q |
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| T |
1414101 |
acgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
1414021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1419950 - 1419822
Alignment:
| Q |
1 |
tcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1419950 |
tcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaagtacatgaatta |
1419851 |
T |
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| Q |
101 |
acctcatgaaattcatgaggctaattcat |
129 |
Q |
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| T |
1419850 |
acctcatagaattcatgaggctaattcat |
1419822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 1410965 - 1410884
Alignment:
| Q |
37 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcatga |
118 |
Q |
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| T |
1410965 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagtatatgaattagcctcatagaattcatga |
1410884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1411025 - 1410990
Alignment:
| Q |
1 |
tcaccaaagttataaattgcagggtacacacatttg |
36 |
Q |
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| T |
1411025 |
tcaccaaagttataaattgcagggtacacacatttg |
1410990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 1408080 - 1408010
Alignment:
| Q |
46 |
acttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcat |
116 |
Q |
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|||||||| ||| || |||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
1408080 |
acttgaatgaatgtaaatgtcacacacagattgaaaaaccaaagtacatgaattaatctcatagaattcat |
1408010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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