View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11222_low_7 (Length: 304)

Name: NF11222_low_7
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11222_low_7
NF11222_low_7
[»] chr4 (3 HSPs)
chr4 (18-207)||(53400896-53401085)
chr4 (229-293)||(53400648-53400712)
chr4 (116-161)||(9962855-9962900)
[»] chr7 (3 HSPs)
chr7 (18-203)||(7346425-7346613)
chr7 (229-294)||(7346812-7346877)
chr7 (193-230)||(7346619-7346656)
[»] chr8 (1 HSPs)
chr8 (229-294)||(36519424-36519486)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 53401085 - 53400896
Alignment:
Q  18 acccccaccacaaaattcgaaggttcaacggaagtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcaccaaaactac 117  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||    
T  53401085 acccccaccacaaaattcaaaggttcaacagaagtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccac 53400986  T
Q  118 cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactccgccgtcgcaccaaagcaacaatctcatttcgattttga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53400985 cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactccgtcgtcgcaccaaagcaacaatctcatttcgattttga 53400896  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 53400712 - 53400648
Alignment:
Q  229 atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53400712 atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctat 53400648  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 9962855 - 9962900
Alignment:
Q  116 accacctccaacgactgattccgccgtaaacgtccatcatttcccg 161  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||    
T  9962855 accacctccatcgactgattccgccgtagacggccatcatttcccg 9962900  T

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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 7346425 - 7346613
Alignment:
Q  18 acccccaccacaaaattcgaaggttcaacggaagtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcaccaaaactac 117  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||    
T  7346425 acccccaccacaaaattcgaaggttcaaccgaggtagagaggcagaatcagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccac 7346524  T
Q  118 cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactccgccgtcgc---accaaagcaacaatctcatttcgatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||   |  |||||||||||||||||||||||    
T  7346525 cacctccaacgactgattccgccgtaaacgtccatcatttcccgtcgactctgccgttgcataaaaaaagcaacaatctcatttcgatt 7346613  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 7346812 - 7346877
Alignment:
Q  229 atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7346812 atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctatg 7346877  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 7346619 - 7346656
Alignment:
Q  193 tcatttcgattttgagtttcttcctgatgattttcaat 230  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7346619 tcatttcgattttgaatttcttcctgatgattttcaat 7346656  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 36519486 - 36519424
Alignment:
Q  229 atagtaatatcgacagataatatcaacatttgtagataaaagaagaaactacactaatatcctatg 294  Q
    ||||||||||| |||||||||||||||||||| |||||||   |||||||||| ||||||||||||    
T  36519486 atagtaatatcaacagataatatcaacatttgcagataaa---agaaactacagtaatatcctatg 36519424  T

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