View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11222_low_9 (Length: 288)
Name: NF11222_low_9
Description: NF11222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11222_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 8954092 - 8954342
Alignment:
| Q |
18 |
ataactagaatgatttttcattattttcattatataatccagtagtaagatttaatttaactgtagttcatgaaatattcgatatgatcatccatatatt |
117 |
Q |
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| T |
8954092 |
ataactagaatgatttttcattattttcattatataatccagtagtaagatttaatttaactgtagttcatgaaatattagatatgatcatccatatatt |
8954191 |
T |
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| Q |
118 |
gatcaaattacctaaactcattgtgccactgtcaccttaactatgtgatcaattgttgtgttcttgtgtattaatttgtacgtttactttagaatcagat |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8954192 |
gatcaaattacctagactcattgtgccactgtcaccttaactatgtgatcaatcgttgtgttcttgtgtattaatttgtacgtttactttagaatcagat |
8954291 |
T |
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| Q |
218 |
ttactattctgacagacatataaggaatattttttataatttatcagcatg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8954292 |
ttactattctgacagacatataaggaatattttttataatttatcagcatg |
8954342 |
T |
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