View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11223_low_1 (Length: 690)

Name: NF11223_low_1
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11223_low_1
NF11223_low_1
[»] chr5 (7 HSPs)
chr5 (184-672)||(28203461-28203950)
chr5 (33-164)||(16104941-16105072)
chr5 (33-164)||(11583326-11583457)
chr5 (33-97)||(109680-109745)
chr5 (33-89)||(20313987-20314043)
chr5 (33-80)||(33150147-33150194)
chr5 (131-164)||(109777-109810)
[»] chr3 (11 HSPs)
chr3 (33-164)||(7853259-7853390)
chr3 (33-164)||(33341289-33341421)
chr3 (33-167)||(54652392-54652526)
chr3 (33-161)||(47785565-47785693)
chr3 (33-97)||(19946040-19946105)
chr3 (47-129)||(37917222-37917304)
chr3 (47-133)||(15549739-15549825)
chr3 (47-128)||(25104839-25104920)
chr3 (47-80)||(4813228-4813261)
chr3 (131-164)||(19945975-19946008)
chr3 (131-167)||(9591529-9591565)
[»] scaffold0150 (2 HSPs)
scaffold0150 (33-164)||(21056-21187)
scaffold0150 (33-164)||(27885-28016)
[»] chr4 (5 HSPs)
chr4 (33-164)||(16522127-16522258)
chr4 (33-164)||(7186586-7186717)
chr4 (41-139)||(17376297-17376395)
chr4 (33-97)||(9295039-9295103)
chr4 (47-89)||(12134497-12134539)
[»] chr6 (5 HSPs)
chr6 (33-164)||(18824234-18824365)
chr6 (33-164)||(18840089-18840220)
chr6 (33-164)||(17084073-17084204)
chr6 (33-164)||(18582633-18582764)
chr6 (33-164)||(4990351-4990481)
[»] chr2 (5 HSPs)
chr2 (33-164)||(25212323-25212454)
chr2 (33-156)||(24827619-24827742)
chr2 (47-115)||(20272703-20272771)
chr2 (33-89)||(19434151-19434207)
chr2 (33-89)||(43642253-43642309)
[»] scaffold0120 (2 HSPs)
scaffold0120 (33-164)||(18676-18808)
scaffold0120 (33-164)||(30461-30593)
[»] chr7 (6 HSPs)
chr7 (33-164)||(7284895-7285026)
chr7 (33-80)||(14275533-14275580)
chr7 (47-80)||(15978693-15978726)
chr7 (41-96)||(3192925-3192980)
chr7 (52-139)||(44305973-44306060)
chr7 (51-139)||(28719783-28719871)
[»] scaffold0310 (1 HSPs)
scaffold0310 (33-164)||(954-1085)
[»] scaffold0028 (2 HSPs)
scaffold0028 (33-97)||(129900-129964)
scaffold0028 (131-164)||(129835-129868)
[»] scaffold0317 (1 HSPs)
scaffold0317 (47-139)||(13414-13506)
[»] scaffold0183 (1 HSPs)
scaffold0183 (33-89)||(10350-10406)
[»] scaffold0833 (1 HSPs)
scaffold0833 (36-97)||(2642-2703)
[»] scaffold0231 (1 HSPs)
scaffold0231 (36-89)||(13543-13596)
[»] scaffold0013 (1 HSPs)
scaffold0013 (47-128)||(7984-8065)
[»] scaffold0468 (1 HSPs)
scaffold0468 (47-139)||(11855-11947)
[»] chr8 (4 HSPs)
chr8 (33-80)||(24107195-24107243)
chr8 (52-139)||(20176734-20176821)
chr8 (52-139)||(20221461-20221548)
chr8 (33-80)||(34012805-34012852)
[»] scaffold0090 (1 HSPs)
scaffold0090 (33-96)||(3950-4013)
[»] scaffold0158 (1 HSPs)
scaffold0158 (33-97)||(24479-24543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (33-89)||(12115-12171)
[»] scaffold0032 (1 HSPs)
scaffold0032 (47-80)||(117043-117076)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 184 - 672
Target Start/End: Complemental strand, 28203950 - 28203461
Alignment:
Q  184 acattatcaaccatagaatttcaccccaaaactctcaacacttagccttaaatttcctttttgg-tgattcttccaaatcatcagggcaatttgaattac 282  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28203950 acattatcaaccatagaatttcaccccaaaactcttaacacttagccttaaatttcctttttgggtgattcttccaaatcatcagggcaatttgaattac 28203851  T
Q  283 gtgtgccagaataatccaggacgcagtttcaacatcctgattcgatctttnnnnnnnnncatccttattcgaattacccaaacaaaagcatgaaaaaaca 382  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  28203850 gtgtgacagaataatccaggacgcagtttcaacatcctgattcgatcttctaaaaaaaacatccttattcgaattacccaaacaaaagcatgaaaaaaca 28203751  T
Q  383 ataatttcaatcactctaattacccccgcctcaattttttaaatcgttcgaaaggtagtttaatcattttnnnnnnnnnnnnnnnnnntgtcatgattta 482  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||    
T  28203750 ctaatttcaatcactctaattaccctc-cctcaattttttaaatcgttcgaaaggtagtttaatcatttt-aaaaaaataaaataaaatgtcatgattta 28203653  T
Q  483 cactcaaaataattattttgctaaacgtatttttaa---cnnnnnnncctttgcaaattaaaatgtcggttatcatagggtattttttaaaagtagtgtg 579  Q
    |||||||||||||||||||||||||||||||||| |           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28203652 cactcaaaataattattttgctaaacgtatttttcattttttttcttcctttgcaaattaaaatgtcggttatcatagggtattttttaaaagtagtgtg 28203553  T
Q  580 taatcttaaactaggcatataataagacagataaaataagtaatattctttgttgtcaataatatgttaaatttgtccaacacatatagttgc 672  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||    
T  28203552 taatcttaaactaggcttataataagacagataaaataagtaatattttgtgttgtcaataatatgtt-aatttgtccaacacatatagttgc 28203461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 16105072 - 16104941
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||||  ||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  16105072 atcaaagcttgattctaacttggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcgtaatttggtaattttgatga 16104973  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  16104972 ttttgtcgaaatgaacttttgtgaactaaata 16104941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 11583457 - 11583326
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| ||||||| |||||||||||||||  |||||||||  ||||||| |||||||  |||||||||||||||| || ||||||||||||     
T  11583457 atcatagcttgattctaactttgttttgttttgaaaaggaattggttttgcaatatggaagaaatgatatgaacttgtcgtaacttggtaattttgatgt 11583358  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  11583357 ttttgtcgaaatgaacttttgtgaactaaata 11583326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 109680 - 109745
Alignment:
Q  33 atcatagcttgatcctaacttgg-ttttgttttgaaaataaattggtttgacaatatgaaagaaat 97  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||||| |||||||    
T  109680 atcatagcttgatcctaacttggtttttgttttgaaaatgaattggttttgcaatatggaagaaat 109745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 20314043 - 20313987
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||||  |||||||    
T  20314043 atcatagcttgattctaacttggttttgttttgaaaatgaattagttttgcaatatg 20313987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 33150147 - 33150194
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggttt 80  Q
    |||||| |||||| |||||||||||||||||||||||| | |||||||    
T  33150147 atcataacttgattctaacttggttttgttttgaaaatgagttggttt 33150194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 109777 - 109810
Alignment:
Q  131 gattatgtcaaaatgaacttttgtgaactaaata 164  Q
    |||| |||||||||||||||||||||||||||||    
T  109777 gattttgtcaaaatgaacttttgtgaactaaata 109810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 7853390 - 7853259
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  7853390 atcatagcttgatcctaacttagttttgttttgaaaataaattggttttgcaatatggaagaaatgatatgaacttgtcgtaatttggtaattttgatga 7853291  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  7853290 ttttgtcgaaatgaacttttgtgaactaaata 7853259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 33341421 - 33341289
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||  ||||||| |||||||  |||||||||||||||||||  ||||||||||||    
T  33341421 atcatagcttgattctaacttggttttgttttgaaaatgatttggtttcgcaatatggaagaaatgatatgaacttgtcgtaatttgataattttgatga 33341322  T
Q  133 -ttatgtcaaaatgaacttttgtgaactaaata 164  Q
     || |||||||||||||||||||||||||||||    
T  33341321 tttttgtcaaaatgaacttttgtgaactaaata 33341289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 54652392 - 54652526
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| |||  ||||||| || ||||  ||||| |||||||||| || |||||||||||||    
T  54652392 atcatagcttgatcctaactttgttttgttttgaaaatgaattgatttcgcaatatggaacaaatgatatgatcttgtcgtaacttggtaattttgatga 54652491  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaataaga 167  Q
    || |||| ||| |||||||||||||||||||||||    
T  54652492 ttttgtcgaaacgaacttttgtgaactaaataaga 54652526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 47785565 - 47785693
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| |||  ||||||| || ||||  |||||||||| ||||| || |||||||||||||    
T  47785565 atcatagcttgatcctaactttgttttgttttgaaaatgaattgattttgcaatatggaataaatgatatgaacttgccgtaacttggtaattttgatga 47785664  T
Q  133 ttatgtcaaaatgaacttttgtgaactaa 161  Q
    || |||| ||||||| |||||||||||||    
T  47785665 ttttgtcgaaatgaaattttgtgaactaa 47785693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 19946105 - 19946040
Alignment:
Q  33 atcatagcttgatcctaacttgg-ttttgttttgaaaataaattggtttgacaatatgaaagaaat 97  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||||| |||||||    
T  19946105 atcatagcttgatcctaacttggtttttgttttgaaaatgaattggttttgcaatatggaagaaat 19946040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 37917222 - 37917304
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttga 129  Q
    ||||||||||||||||||||| || |||||||||  ||||||| |||||||  || ||||||||||||| || || |||||||    
T  37917222 ctaacttggttttgttttgaacatgaattggttttgcaatatggaagaaatgatacgaacttgtcgtaactttgtgattttga 37917304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 15549825 - 15549739
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgat 133  Q
    |||||||||||||||||||||||| |||||||||   |||||| ||||||   || ||||||||||||| || |  |||||||||||    
T  15549825 ctaacttggttttgttttgaaaatgaattggttttgtaatatggaagaaacgatacgaacttgtcgtaacttggagattttgatgat 15549739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 25104839 - 25104920
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttg 128  Q
    ||||||||||||||||| |||||| |||||||||  ||||||| ||| |||  || ||||||||||||| || || ||||||    
T  25104839 ctaacttggttttgtttggaaaatgaattggttttgcaatatggaaggaatgatacgaacttgtcgtaactttgtgattttg 25104920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 4813261 - 4813228
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggttt 80  Q
    |||||||||||||||||||||||| |||||||||    
T  4813261 ctaacttggttttgttttgaaaatgaattggttt 4813228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 19946008 - 19945975
Alignment:
Q  131 gattatgtcaaaatgaacttttgtgaactaaata 164  Q
    |||| |||||||||||||||||||||||||||||    
T  19946008 gattttgtcaaaatgaacttttgtgaactaaata 19945975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 9591529 - 9591565
Alignment:
Q  131 gattatgtcaaaatgaacttttgtgaactaaataaga 167  Q
    |||| |||||||||||||||||||||||||| |||||    
T  9591529 gattttgtcaaaatgaacttttgtgaactaactaaga 9591565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 21187 - 21056
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||||  |||||||||||||||| || |||||||| ||||    
T  21187 atcatagcttgatcctaacttggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcgtaacttggtaatttttatga 21088  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  21087 ttttgtcgaaatgaacttttgtgaactaaata 21056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 28016 - 27885
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||||  |||||||||||||||| || |||||||| ||||    
T  28016 atcatagcttgatcctaacttggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcgtaacttggtaatttttatga 27917  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  27916 ttttgtcgaaatgaacttttgtgaactaaata 27885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 16522258 - 16522127
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| |||||||  |||||||||| |||||||| |||||||||||||    
T  16522258 atcatagcttgattctaacttggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgccgtaatttggtaattttgatga 16522159  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  16522158 ttttgtccaaatgaacttttgtgaactaaata 16522127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 7186586 - 7186717
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||  ||||||| |||||||  |||||||||||||||| || ||||||||| |||    
T  7186586 atcatagctttatcctaacatggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcgtaacttggtaattttgttga 7186685  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| |||||||||||||| |||||||||    
T  7186686 ttttgtcgaaatgaacttttgtaaactaaata 7186717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 17376297 - 17376395
Alignment:
Q  41 ttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    ||||| |||||||| ||||||||||||||| |||||||||  ||||||| |||||||  || ||||||||||||| || || |||||||||||| ||||    
T  17376297 ttgattctaacttgattttgttttgaaaatgaattggttttgcaatatggaagaaatgatacgaacttgtcgtaactttgtgattttgatgattttgtc 17376395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 9295103 - 9295039
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaat 97  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||| ||| |||||||    
T  9295103 atcatagcttgattctaacttggttttgttttgaaaatgaattggttttgcaacatggaagaaat 9295039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 12134497 - 12134539
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    |||||||||||||||||||||||| |||||||||  |||||||    
T  12134497 ctaacttggttttgttttgaaaatgaattggttttgcaatatg 12134539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 18824234 - 18824365
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||||||||| ||| |||| ||||  ||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  18824234 atcatagcttgattctaacttggttttgttttgataatgaattcgttttgcaatatggaagaaatgatatgaacttgtcgtaatttggtaattttgatga 18824333  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  18824334 ttttgtcgaaatgaacttttgtgaactaaata 18824365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 18840089 - 18840220
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||||||||| ||| |||| ||||  ||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  18840089 atcatagcttgattctaacttggttttgttttgataatgaattcgttttgcaatatggaagaaatgatatgaacttgtcgtaatttggtaattttgatga 18840188  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  18840189 ttttgtcgaaatgaacttttgtgaactaaata 18840220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 17084073 - 17084204
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| |||||||  |||||||||||| ||| |  ||||||||||| |    
T  17084073 atcatagcttgattctaacttggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcataactcggtaattttgataa 17084172  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||| ||||||    
T  17084173 ttttgtcgaaatgaacttttgtgaattaaata 17084204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 18582764 - 18582633
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    |||||| ||||||  | ||||||||||||||||||||| ||||| |||  ||||||| |||||||  |||||||||||||||| || |||||||||||||    
T  18582764 atcataacttgattttcacttggttttgttttgaaaatgaattgatttcgcaatatggaagaaatgatatgaacttgtcgtaacttggtaattttgatga 18582665  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||||||||||||||||||||    
T  18582664 ttttgtcgaaatgaacttttgtgaactaaata 18582633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 4990481 - 4990351
Alignment:
Q  33 atcatagcttgatcctaacttgg-ttttgttttgaaaataaattggtttgacaatatgaaagaaatagtat-gaacttgtcgtaatttagtaattttgat 130  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||   |||||| |||||||  ||| |||||||  | | ||||| || | |       
T  4990481 atcatagcttgatcctaacttggtttttgttttgaaaatgaattggttttgaaatatggaagaaatgatatggaacttg--gaattttaggaaatgt-cg 4990385  T
Q  131 gattatgtcaaaatgaacttttgtgaactaaata 164  Q
    |||| |||||||||||||||||||||||||||||    
T  4990384 gattttgtcaaaatgaacttttgtgaactaaata 4990351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 25212454 - 25212323
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  25212454 atcatagcttgatcctaacttagttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcgtaatttggtaattttgatga 25212355  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||| |||||||||||||| |||||    
T  25212354 ttttgtcgaaacgaacttttgtgaaccaaata 25212323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 24827619 - 24827742
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| |||||||  ||||||||||||||||||  |||||||||||||    
T  24827619 atcatagcttgattctaacttggttttgttttgaaaatgaattggttttgcaatatggaagaaatgatatgaacttgtcgtaattcggtaattttgatga 24827718  T
Q  133 ttatgtcaaaatgaacttttgtga 156  Q
    || |||| ||||||||||||||||    
T  24827719 ttttgtcgaaatgaacttttgtga 24827742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 20272771 - 20272703
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaa 115  Q
    |||||||||||||||||||||||| |||||||||  ||||||| ||| |||  || |||||||||||||    
T  20272771 ctaacttggttttgttttgaaaatgaattggttttgcaatatggaaggaatgctacgaacttgtcgtaa 20272703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 19434151 - 19434207
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | |||||||  |||||||    
T  19434151 atcatagcttgattctaacatggttttgttttgaaaatgatttggttttgcaatatg 19434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 43642309 - 43642253
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    ||||||| ||||| ||||| |||||||||||||||||  |||||||||  |||||||    
T  43642309 atcatagtttgattctaacgtggttttgttttgaaaacgaattggttttgcaatatg 43642253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 18808 - 18676
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaa-ataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatg 131  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||   |||||| |||||||  ||||||||||||||||||| |||||| |||||    
T  18808 atcatagcttgatcctaacttggttttgttttgaaataggaattggttttgtaatatggaagaaatgatatgaacttgtcgtaatttggtaattgtgatg 18709  T
Q  132 attatgtcaaaatgaacttttgtgaactaaata 164  Q
    ||| |||| ||||||||||||||||||||||||    
T  18708 attttgtcgaaatgaacttttgtgaactaaata 18676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 30593 - 30461
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaa-ataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatg 131  Q
    ||||||||||||||||||||||||||||||| |||| |  |||||||||   |||||| ||| |||  ||||||||||||||||||| ||||||||||||    
T  30593 atcatagcttgatcctaacttggttttgtttagaaataggaattggttttgtaatatggaagtaatgatatgaacttgtcgtaatttggtaattttgatg 30494  T
Q  132 attatgtcaaaatgaacttttgtgaactaaata 164  Q
    ||| |||| ||||||||||||||||||||||||    
T  30493 attttgtcgaaatgaacttttgtgaactaaata 30461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 7284895 - 7285026
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||| ||||| |||||||||||||||||||||||| ||| |||||| ||||| | |||||||  |||||||||||||||| || |||||||||| ||    
T  7284895 atcatagattgattctaacttggttttgttttgaaaatgaatcggtttggcaatacggaagaaatgatatgaacttgtcgtaacttggtaattttgacga 7284994  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| ||||||| ||||||||||||||||    
T  7284995 ttttgtcgaaatgaaattttgtgaactaaata 7285026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 14275533 - 14275580
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggttt 80  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  14275533 atcatagcttgattctaacgtggttttgttttgaaaatgaattggttt 14275580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 15978693 - 15978726
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggttt 80  Q
    ||||||||||||||||||||||||||||||||||    
T  15978693 ctaacttggttttgttttgaaaataaattggttt 15978726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 3192925 - 3192980
Alignment:
Q  41 ttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaa 96  Q
    ||||| |||||||||||||||||||||||| ||||| |||  ||||||| ||||||    
T  3192925 ttgattctaacttggttttgttttgaaaatgaattgattttgcaatatggaagaaa 3192980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 44305973 - 44306060
Alignment:
Q  52 ttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    ||||||||||||||||||| |||||||||  || |||| || ||||| || |||||||| ||| |||  | |||||||||||| ||||    
T  44305973 ttggttttgttttgaaaatgaattggttttgcattatggaataaataatacgaacttgttgtagttttatgattttgatgattttgtc 44306060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 28719871 - 28719783
Alignment:
Q  51 cttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    |||||||||||||||||||| |||||||||  ||||||| | ||| |  || ||||||||||||  ||  | |||||||||||| ||||    
T  28719871 cttggttttgttttgaaaatgaattggttttgcaatatggaggaagtgatacgaacttgtcgtagctttatgattttgatgattttgtc 28719783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 954 - 1085
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatga 132  Q
    ||||||||||||| |||||||||||||| |||| |||| | ||| |||  ||||||| |||||||  |||||||||||||||| || |||||||||||||    
T  954 atcatagcttgattctaacttggttttgatttggaaatgatttgatttcgcaatatggaagaaatgatatgaacttgtcgtaacttggtaattttgatga 1053  T
Q  133 ttatgtcaaaatgaacttttgtgaactaaata 164  Q
    || |||| |||||||||||||| |||||||||    
T  1054 ttttgtcgaaatgaacttttgtaaactaaata 1085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 129964 - 129900
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaat 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||  ||||||| |||||||    
T  129964 atcatagcttgatcctaacttggttttgttttgaaaatgaattgattttgcaatatggaagaaat 129900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 129868 - 129835
Alignment:
Q  131 gattatgtcaaaatgaacttttgtgaactaaata 164  Q
    |||| |||||||||||||||||||||||||||||    
T  129868 gattttgtcaaaatgaacttttgtgaactaaata 129835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 13414 - 13506
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    ||||||| |||||||||||||||| |||||||||  ||||||| |||||||  || ||| ||||||||| || || |||||||||||| ||||    
T  13414 ctaactttgttttgttttgaaaatgaattggttttgcaatatggaagaaatgatacgaaattgtcgtaactttgtgattttgatgattttgtc 13506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 10406 - 10350
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  |||||||    
T  10406 atcatagcttgattctaacttggttttgttttgaaaatgaattggttttgcaatatg 10350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 2703 - 2642
Alignment:
Q  36 atagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaat 97  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||  ||||||| |||||||    
T  2703 ataggttgatcctaacttggttttgttttaaaaatgaattggttttgcaatatggaagaaat 2642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 13543 - 13596
Alignment:
Q  36 atagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    |||||||||| |||||||||||||||||||||||| |||||||||  |||||||    
T  13543 atagcttgattctaacttggttttgttttgaaaatgaattggttttgcaatatg 13596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 7984 - 8065
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttg 128  Q
    ||||||||||||||||| |||||| |||||||||  ||||||| ||| |||  || |||||||||||||||| || ||||||    
T  7984 ctaacttggttttgtttggaaaatgaattggttttgcaatatggaaggaatgatacgaacttgtcgtaattttgtgattttg 8065  T

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Target: scaffold0468 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 11855 - 11947
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    |||||||| ||||||||||||||| |||||||||  || |||| |||||||  || ||||||||| ||| || || |||||||||||| ||||    
T  11855 ctaacttgtttttgttttgaaaatgaattggttttgcactatggaagaaatgatacgaacttgtcataactttgtgattttgatgattttgtc 11947  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 24107195 - 24107243
Alignment:
Q  33 atcatagcttgatcctaacttgg-ttttgttttgaaaataaattggttt 80  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  24107195 atcatagcttgatcctaacttggtttttgttttgaaaatgaattggttt 24107243  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 20176734 - 20176821
Alignment:
Q  52 ttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    ||||||||||||||||||| |||||||||  || |||| || ||||| || |||||||| ||| |||  | |||||||||||| ||||    
T  20176734 ttggttttgttttgaaaatgaattggttttgcattatggaataaataatacgaacttgttgtagttttatgattttgatgattttgtc 20176821  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 20221461 - 20221548
Alignment:
Q  52 ttggttttgttttgaaaataaattggtttgacaatatgaaagaaatagtatgaacttgtcgtaatttagtaattttgatgattatgtc 139  Q
    ||||||||||||||||||| |||||||||  || |||| || ||||| || |||||||| ||| |||  | |||||||||||| ||||    
T  20221461 ttggttttgttttgaaaatgaattggttttgcattatggaataaataatacgaacttgttgtagttttatgattttgatgattttgtc 20221548  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 34012805 - 34012852
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggttt 80  Q
    |||||| |||||| |||||||||||||||||||||||| | |||||||    
T  34012805 atcataacttgattctaacttggttttgttttgaaaatgagttggttt 34012852  T

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Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 3950 - 4013
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaa 96  Q
    ||||||||||||| ||||| | |||||||||||||||| |||||||||  |||||||| |||||    
T  3950 atcatagcttgattctaacgtagttttgttttgaaaatgaattggttttgcaatatgagagaaa 4013  T

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Target: scaffold0158 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 24543 - 24479
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatgaaagaaat 97  Q
    ||||||||||||| ||||||| ||||| |||| ||||| |||||||||  ||||||| |||||||    
T  24543 atcatagcttgattctaactttgttttttttttaaaatgaattggttttgcaatatggaagaaat 24479  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 12171 - 12115
Alignment:
Q  33 atcatagcttgatcctaacttggttttgttttgaaaataaattggtttgacaatatg 89  Q
    |||||| |||||| |||||||||||||||||||||||| || ||||||  |||||||    
T  12171 atcataacttgattctaacttggttttgttttgaaaatgaactggttttgcaatatg 12115  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 117043 - 117076
Alignment:
Q  47 ctaacttggttttgttttgaaaataaattggttt 80  Q
    |||||||||||||||||||||||| |||||||||    
T  117043 ctaacttggttttgttttgaaaatgaattggttt 117076  T

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