View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11223_low_10 (Length: 275)
Name: NF11223_low_10
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 33628116 - 33628368
Alignment:
| Q |
1 |
aatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628116 |
aatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaat |
33628215 |
T |
|
| Q |
101 |
ataagaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628216 |
ataagaagcactggacaaagcatagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttg |
33628315 |
T |
|
| Q |
201 |
gggcatttttgttctatgctggttgggttgttgtgatgactcttttcattata |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628316 |
gggcatttttgttctatgctggttgggttgttgtgatgactcttttcattata |
33628368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33623729 - 33623957
Alignment:
| Q |
1 |
aatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaat |
100 |
Q |
| |
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||||||| ||||||||||||| ||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| || | || |
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| T |
33623729 |
aatattgatattggtactaatatgtttctgtgctgcgggtttagatttgtcgtggagccctctaacatggctaattccaactgagattttccccatttat |
33623828 |
T |
|
| Q |
101 |
ataagaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttg |
200 |
Q |
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||| |||||| | ||||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| || | |||| |
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| T |
33623829 |
ataggaagcattcgacaaagcatagctgttgttgtgcatttcataatggtctttgtgctatcgcaaacattcttgactatgttatgccagttatactttg |
33623928 |
T |
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| Q |
201 |
gggcatttttgttctatgctggttgggtt |
229 |
Q |
| |
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|||| ||||||||||||| ||||||||| |
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| T |
33623929 |
gggccattttgttctatgcgggttgggtt |
33623957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33618913 - 33619155
Alignment:
| Q |
1 |
aatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaat |
100 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| |||| |||||||||| ||| ||| |||| |||||||||| ||||||| ||||||||| |||||||| |
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| T |
33618913 |
aatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggtccattaacatggcttattccaagtgagattttcccagtaaaa |
33619012 |
T |
|
| Q |
101 |
ataagaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttg |
200 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
33619013 |
ataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagtttg |
33619112 |
T |
|
| Q |
201 |
gggcatttttgttctatgctggttgggttgttgtgatgactct |
243 |
Q |
| |
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|||| || | ||||||||| ||||||| ||||||||||||| |
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|
| T |
33619113 |
gggccttcgtcttctatgctttttgggttattgtgatgactct |
33619155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 33609631 - 33609883
Alignment:
| Q |
1 |
aatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaat |
100 |
Q |
| |
|
|||||| |||||||| ||| | ||||| || |||| |||||||||| ||| ||| |||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
33609631 |
aatattagtattggtgctattatgtttatactctgctggttttggttggtcatggggtcctctaacatggcttattccaagtgagattttcccagtaaat |
33609730 |
T |
|
| Q |
101 |
ataagaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttg |
200 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||| | || |||||||| |||||||| |||| |||||||||||||| |||||||| ||||| ||||||| |
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|
| T |
33609731 |
ataagaaccacaggacaaagcatagctattgctatacaattcataatagtatttgtgctatcacaaacattcttgacaatgttatgtcactttaagtttg |
33609830 |
T |
|
| Q |
201 |
gggcatttttgttctatgctggttgggttgttgtgatgactcttttcattata |
253 |
Q |
| |
|
| || || |||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
33609831 |
gagccttcttgttctatgctggttgggttgctgtgatgactctttttattata |
33609883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 33596207 - 33596446
Alignment:
| Q |
4 |
attggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaatata |
103 |
Q |
| |
|
|||||||||||| || | |||||||| || || |||||||||| ||| ||| |||| || || ||||||||||||| ||| ||||| || |||| || |
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| T |
33596207 |
attggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattccaagtgaaattttccccttaaaaatc |
33596306 |
T |
|
| Q |
104 |
agaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttgggg |
203 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| || |||||||| | ||||||||||| |||||||||||||| ||| |||||||||| |||||||| | |
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| T |
33596307 |
agaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgccacttcaagtttggtg |
33596406 |
T |
|
| Q |
204 |
catttttgttctatgctggttgggttgttgtgatgactct |
243 |
Q |
| |
|
| || ||||||||||| |||||||| ||||||||||| |
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|
| T |
33596407 |
ctttcttgttctatgcattttgggttgcagtgatgactct |
33596446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 33603338 - 33603577
Alignment:
| Q |
4 |
attggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaatata |
103 |
Q |
| |
|
|||||||||||| || | |||||||| || || |||||||||| ||| ||| |||| || || ||||||||||||| ||| ||||| || |||| || |
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| T |
33603338 |
attggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattccaagtgaaattttccccttaaaaatc |
33603437 |
T |
|
| Q |
104 |
agaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttgggg |
203 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| || |||||||| | ||||||||||| |||||||||||||| ||| |||||||||| |||||||| | |
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|
| T |
33603438 |
agaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgccacttcaagtttggtg |
33603537 |
T |
|
| Q |
204 |
catttttgttctatgctggttgggttgttgtgatgactct |
243 |
Q |
| |
|
| || ||||||||||| |||||||| ||||||||||| |
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| T |
33603538 |
ctttcttgttctatgcattttgggttgcagtgatgactct |
33603577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 33589035 - 33589274
Alignment:
| Q |
4 |
attggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaatata |
103 |
Q |
| |
|
|||||||||||| || | |||||||| || || |||||||||| ||| ||| |||| || || ||||||||||||| ||| ||||| || |||| || |
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|
| T |
33589035 |
attggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattccaagtgaaattttccccttaaaaatc |
33589134 |
T |
|
| Q |
104 |
agaagcactggacaaagcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttgggg |
203 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| || |||||||| | ||| ||||||| |||||||||||||| ||| |||||||||| |||||||| | |
|
|
| T |
33589135 |
agaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttatgttatcacaaacattcttgacaatgctatgccacttcaagtttggtg |
33589234 |
T |
|
| Q |
204 |
catttttgttctatgctggttgggttgttgtgatgactct |
243 |
Q |
| |
|
| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
33589235 |
ctttcttgttctatgcattttgggttgcagtgatgactct |
33589274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 33563470 - 33563703
Alignment:
| Q |
20 |
atgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaatataagaagcactggacaaa |
119 |
Q |
| |
|
||||||||||| |||| |||||||||| ||| ||| |||||||| |||| ||||||||| ||| |||||||| | || || |||| |||||||||| |
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| T |
33563470 |
atgtgtttctactctgcaggttttggttggtcatggggtcctctattatggataattccaagtgaaatttttcctttgaaaatcagaacaactggacaaa |
33563569 |
T |
|
| Q |
120 |
gcatagcagttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgc |
219 |
Q |
| |
|
||||||| || ||||||| ||||||| ||||||||||| || || ||||||||||| |||||||| |||||||||| ||| || || |||||| || |
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| T |
33563570 |
gcatagctatttctgtgcaattcataactatatttgtgttgtctcagacattcttgacaatgttatgtcacttgaagtatggtgctttcttgttccatag |
33563669 |
T |
|
| Q |
220 |
tggttgggttgttgtgatgactcttttcattata |
253 |
Q |
| |
|
|| |||| ||||||| ||||| || || |||||| |
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|
| T |
33563670 |
tgcttggattgttgtcatgaccctctttattata |
33563703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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