View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_11 (Length: 242)
Name: NF11223_low_11
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 38447546 - 38447331
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
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|||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447546 |
ccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
38447447 |
T |
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| Q |
120 |
tcacaaaaataacgaatgcaaattaatgacatgat-nnnnnnntaccaaattatgtaaagctagatttttcagactagagtgcatgtaaaaaatccaaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38447446 |
tcacaaaaataacgaatgcaaattaatgacatgatcaaaaaaataccaaattatgtaaagctagatttttcagactagagtgtatgtaaaaaatccaaat |
38447347 |
T |
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| Q |
219 |
aacctcctatatatgt |
234 |
Q |
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|||||||||| ||||| |
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| T |
38447346 |
aacctcctatgtatgt |
38447331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 26033224 - 26033358
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
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|||||||| ||||||||||||||||||||||| ||| | |||||| |||||||| ||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
26033224 |
ccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtcattatcgcttcttcccggtaactg |
26033323 |
T |
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| Q |
120 |
tcacaaaaataacgaatgcaaattaatgacatgat |
154 |
Q |
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|||||||| ||||||| ||||||||||||||||| |
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| T |
26033324 |
acacaaaaagaacgaatacaaattaatgacatgat |
26033358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 38181012 - 38180913
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
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|||||||| | ||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
38181012 |
ccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg |
38180913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 38190119 - 38190218
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
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|||||||| | ||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
38190119 |
ccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg |
38190218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 38208236 - 38208137
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
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|||||||| | ||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
38208236 |
ccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg |
38208137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 38217344 - 38217443
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
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|
|||||||| | ||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
38217344 |
ccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg |
38217443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 38456372 - 38456273
Alignment:
| Q |
20 |
ccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg |
119 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
38456372 |
ccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg |
38456273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 38342826 - 38342704
Alignment:
| Q |
23 |
tgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactgtca |
122 |
Q |
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||||| |||||||||||||||||| | | ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38342826 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttccaggcatctgtca |
38342727 |
T |
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| Q |
123 |
caaaaataacgaatgcaaattaa |
145 |
Q |
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|||||| || |||| |||||||| |
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| T |
38342726 |
caaaaagaatgaatacaaattaa |
38342704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 38447019 - 38446897
Alignment:
| Q |
23 |
tgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactgtca |
122 |
Q |
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||||| |||||||||||||||||| | | ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38447019 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttccaggcatctgtca |
38446920 |
T |
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| Q |
123 |
caaaaataacgaatgcaaattaa |
145 |
Q |
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|||||| || |||| |||||||| |
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| T |
38446919 |
caaaaagaatgaatacaaattaa |
38446897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 4121714 - 4121599
Alignment:
| Q |
30 |
agggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactgtcacaaaaat |
129 |
Q |
| |
|
|||| ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||| | ||||||||| |||||||||||| | |
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| T |
4121714 |
agggtagggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatctgatcttccaggaaactgtcacaaagag |
4121615 |
T |
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| Q |
130 |
aacgaatgcaaattaa |
145 |
Q |
| |
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|||||||||||||||| |
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| T |
4121614 |
aacgaatgcaaattaa |
4121599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 53351379 - 53351446
Alignment:
| Q |
60 |
ttttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactgtcacaaaa |
127 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
53351379 |
ttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttccaggcaactatcacaaaa |
53351446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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