View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_12 (Length: 231)
Name: NF11223_low_12
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 37831745 - 37831896
Alignment:
| Q |
46 |
ggtttttgttcttggtatttttt-cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttg----ttcgtgaaggacctcctt |
140 |
Q |
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| T |
37831745 |
ggtttttgttcttggtatttttttcggttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgtttgttcgtgaaggacctcctt |
37831844 |
T |
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| Q |
141 |
taacatctgtgttggttaagaagcttcagttctttggtccaacattattttt |
192 |
Q |
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| T |
37831845 |
taacatctgtgttggttaagaagcttcagttctttggtccaacattattttt |
37831896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 37839887 - 37840033
Alignment:
| Q |
46 |
ggtttttgttcttggtattttttcagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaaca |
145 |
Q |
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| T |
37839887 |
ggtttttcttcttggtattttttcagttaagattaatcaagaatttgtcttaggagccttcattttgggactgtctgttcctgaaggagctcctttagga |
37839986 |
T |
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| Q |
146 |
tctgtgttggttaagaagcttcagttctttggtccaacattattttt |
192 |
Q |
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| T |
37839987 |
tctacattggttaagaagcttcagttctttggtacaacattcttttt |
37840033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 38391605 - 38391459
Alignment:
| Q |
46 |
ggtttttgttcttggtattttttcagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaaca |
145 |
Q |
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| T |
38391605 |
ggtttttgttcttggtattttgtcagttaagattaatcaagaatttgtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttagga |
38391506 |
T |
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| Q |
146 |
tctgtgttggttaagaagcttcagttctttggtccaacattattttt |
192 |
Q |
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| T |
38391505 |
tctgcattggttaagaagcttcagttttttagtacaacattcttttt |
38391459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 38400194 - 38400048
Alignment:
| Q |
46 |
ggtttttgttcttggtattttttcagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaaca |
145 |
Q |
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| T |
38400194 |
ggtttttgttcttggtattttgtcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctctagga |
38400095 |
T |
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| Q |
146 |
tctgtgttggttaagaagcttcagttctttggtccaacattattttt |
192 |
Q |
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| T |
38400094 |
tctgcattggttaagaagcttcagttctttggtacaacattattttt |
38400048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 38382747 - 38382601
Alignment:
| Q |
46 |
ggtttttgttcttggtattttttcagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaaca |
145 |
Q |
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|||||||||| |||| ||||| ||||||||||| ||||||||||| | ||||||||||| |||||||||| | ||||| |||||||||||||||| | |
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| T |
38382747 |
ggtttttgtttttggcattttgtcagttaagattaatcaagaatttgccataggagctttcattttgggactgtctgttcctgaaggacctcctttagga |
38382648 |
T |
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| Q |
146 |
tctgtgttggttaagaagcttcagttctttggtccaacattattttt |
192 |
Q |
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| T |
38382647 |
tctgcattggttaagaagcttcagtttttttgtacaacattcttttt |
38382601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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