View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_16 (Length: 210)
Name: NF11223_low_16
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 25978802 - 25978975
Alignment:
| Q |
18 |
catcatagagtgccttccgaaccaaggcaacttctttgagtgcattggaaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagca |
117 |
Q |
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| T |
25978802 |
catcatagagtgccttccgaaccaaggcaacttctttgagtgcattggaaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagca |
25978901 |
T |
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| Q |
118 |
actgcagcagcaaggttgcttttcttcttaattgatctctccttttcttgtttaggttcatttgtcgaaagcat |
191 |
Q |
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| T |
25978902 |
actgcagcagcaaggttgcttttcttcttaattgatctctccttttcttgtttaggttcatttgtcgaaagcat |
25978975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 25973489 - 25973614
Alignment:
| Q |
60 |
cattggaaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagcaactgcagcagcaaggttgcttttcttcttaattgatctctcc |
159 |
Q |
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| T |
25973489 |
cattggtaattcctcaattgcacatagcaacaacaaaggcgcaacctcttccacagcaaatgcagcagcaaggttgctcttcctcttaattgatttatcc |
25973588 |
T |
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| Q |
160 |
ttttcttgtttaggttcatttgtcga |
185 |
Q |
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| T |
25973589 |
ttctcttgtttaggttcatttgtcga |
25973614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 31829696 - 31829611
Alignment:
| Q |
66 |
aaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagcaactgcagcagcaaggttgcttttcttcttaattg |
151 |
Q |
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| T |
31829696 |
aaattcctcaattgcacgcagcaacagcaacggcataccctcttccacagcaactgcagcagcaaggtaattcttcttcttaattg |
31829611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 31829760 - 31829711
Alignment:
| Q |
18 |
catcatagagtgccttccgaaccaaggcaacttctttgagtgcattggaa |
67 |
Q |
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||||||||||||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
31829760 |
catcatagagtgccttcagaaccagggcaacttccttgagtgcattggaa |
31829711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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