View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11223_low_2 (Length: 526)
Name: NF11223_low_2
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 43976620 - 43977003
Alignment:
| Q |
19 |
caagggagctggactcttccaaatataattgaacacccttttatccccttctccaatcaccatctcattcactctcaacctttcaagtaaagagtaacaa |
118 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43976620 |
caagggagccgaactcttccaaatatcattgaacacccttttatccccttctccaatcaccatctcattcactcgcaacctttcaagtaaagagtaacaa |
43976719 |
T |
|
| Q |
119 |
gactttaccgaaaaacaagcttccacacccaagaatcacaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttc |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43976720 |
gactttaccgataaacaagcttccacacccaagaatcacaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttc |
43976819 |
T |
|
| Q |
219 |
ccacacaaacaagttacgcctccacaacaaactccactctccaacaccatccctcgccgcccacatctcaccgacaagcgcctccttttgaattgacaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43976820 |
ccacacaaacaagttacgcctccacaacaaactccactctccaacaccatccctcgccgcccacatctcaccgacaagcgcctccttttgaattgacaaa |
43976919 |
T |
|
| Q |
319 |
gaataaaggcgcgggaaagcgactcgaaggggatattccatttatatacgacactcttgattatgt-ttcgtcttgaacatcga |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
43976920 |
gaataaaggcgcgggaaagcgactcgaaggggatcttccatttatatacggcactcttgattatgtgtttgtcttgaacatcga |
43977003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 43977077 - 43977128
Alignment:
| Q |
475 |
gtttaataaaatagttttaaaatcatgagaatgttttagttttaaaattcct |
526 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43977077 |
gtttaataaaatagttttaaaatcaggagaatgttttagttttaaaattcct |
43977128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 18022010 - 18022324
Alignment:
| Q |
23 |
ggagctggactcttccaaatataattgaacacccttttatccccttctccaatcaccatctcattcactctcaacctttcaagtaaagagtaacaagact |
122 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||| ||| | ||| | |||||||||||||||||| ||||| |||| |
|
|
| T |
18022010 |
ggagccgggctcttccaaatataatttaacaccctttt-tccccttctccgatcaacatgccggtcatttccaacctttcaagtaaagaataacatgact |
18022108 |
T |
|
| Q |
123 |
ttaccgaaaaa------------caagcttccacacccaagaatcacaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgaga |
210 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||| |||||| | |||||| | |||| | || |||||| ||||| || | |
|
|
| T |
18022109 |
ttaccgaaaaacaaccccgtcatcaagcttccacgcccaaaaatcacaatctccaatcccctcaaaaacacctataaaagttaacaagtcattgacaaag |
18022208 |
T |
|
| Q |
211 |
cctatttcccacacaaacaagttacgcctccacaacaaactccactctccaacaccatccctcgccgcccacatctcaccgacaagcgcctccttttgaa |
310 |
Q |
| |
|
|||| |||||| |||||||| | |||| ||||||| || |||||||| ||| ||| ||| | || ||||| |||| |||| |||||| |||||| |
|
|
| T |
18022209 |
cctacttcccatacaaacaaatgacgcatccacaagaatctccactcaccaccactctccaacaccccccaccattcactaacaaacgcctctttttgag |
18022308 |
T |
|
| Q |
311 |
ttgacaaagaataaag |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18022309 |
ttgacaaagaataaag |
18022324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University