View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_3 (Length: 504)
Name: NF11223_low_3
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_3 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 11695702 - 11696176
Alignment:
| Q |
19 |
tgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11695702 |
tgtttgatggcagaatccaacgaagtgttgttagaagctcagttagctgttgttgatggagtcgttgactacagaggacaacctgccgttagatccaaaa |
11695801 |
T |
|
| Q |
119 |
ctggctattggagatccgcttggtttatcataggtacttaaaaacacacaattttgttatctctgcggtactggattagtccattcttaaaatggactaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11695802 |
ctggctattggagatccgcttggtttatcataggtacttacaaacacacaaatttgttatctctgcggttctgggttagtccattcttaaaatggactaa |
11695901 |
T |
|
| Q |
219 |
tttagaacagcagagattataacttctaacagacttgaaaatacatctttagttttatttatttttatcaaataagattgagaatgaattgtgaatgtta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
11695902 |
tttagaacagcagagattataacttctaacagacttgaaaatacatgtttagttttatttatttttatgaaatgagattgagaatgaattgtgaatgtta |
11696001 |
T |
|
| Q |
319 |
tatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696002 |
tatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaag |
11696101 |
T |
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| Q |
419 |
ctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
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| T |
11696102 |
ctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
11696176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 301 - 493
Target Start/End: Original strand, 11797825 - 11798017
Alignment:
| Q |
301 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
400 |
Q |
| |
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|||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797825 |
aatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11797924 |
T |
|
| Q |
401 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797925 |
aacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
11798017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 301 - 493
Target Start/End: Original strand, 11701781 - 11701973
Alignment:
| Q |
301 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
400 |
Q |
| |
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|||| ||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11701781 |
aatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactca |
11701880 |
T |
|
| Q |
401 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
| |
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|||| |||||||||| ||||||| | ||||| ||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
11701881 |
aacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattctt |
11701973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 301 - 493
Target Start/End: Original strand, 11675888 - 11676080
Alignment:
| Q |
301 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
400 |
Q |
| |
|
||||| || |||||||| | | ||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
11675888 |
aatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactca |
11675987 |
T |
|
| Q |
401 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
11675988 |
aacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattctt |
11676080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 301 - 493
Target Start/End: Original strand, 11684167 - 11684359
Alignment:
| Q |
301 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
400 |
Q |
| |
|
||||| || |||||||| | | ||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
11684167 |
aatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactca |
11684266 |
T |
|
| Q |
401 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
11684267 |
aacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattctt |
11684359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 305 - 493
Target Start/End: Original strand, 11778968 - 11779155
Alignment:
| Q |
305 |
aattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaaca |
404 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| || | || || |||||||||||||||||||| ||||||||||| |
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| T |
11778968 |
aattgtgaatgtta-atttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaaca |
11779066 |
T |
|
| Q |
405 |
aagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
| |
|
||||||||||| |||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
11779067 |
aagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattctt |
11779155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 11675160 - 11675293
Alignment:
| Q |
22 |
ttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaactg |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| || |||||| || ||||| |||||||||| |
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| T |
11675160 |
ttgatggcagaatccaacgaagtgttgttagaacctcagttagctcttgttgatggcgtcgttgactgcaaaggacagcaggcagttaggtccaaaactg |
11675259 |
T |
|
| Q |
122 |
gctattggagatccgcttggtttatcataggtac |
155 |
Q |
| |
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| |||||||||||||||||||||||||| ||||| |
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| T |
11675260 |
gttattggagatccgcttggtttatcattggtac |
11675293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 11683439 - 11683572
Alignment:
| Q |
22 |
ttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaactg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| || |||||| || ||||| |||||||||| |
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| T |
11683439 |
ttgatggcagaatccaacgaagtgttgttagaacctcagttagctcttgttgatggcgtcgttgactgcaaaggacagcaggcagttaggtccaaaactg |
11683538 |
T |
|
| Q |
122 |
gctattggagatccgcttggtttatcataggtac |
155 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |
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| T |
11683539 |
gttattggagatccgcttggtttatcattggtac |
11683572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 11701494 - 11701626
Alignment:
| Q |
22 |
ttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaactg |
121 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| | ||| || |||||||||| | |||||||||| ||||| |||| ||||| | ||| ||| |
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| T |
11701494 |
ttgatggaagaatccaatgaagtgttgttagaagctcaattatctcttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg |
11701593 |
T |
|
| Q |
122 |
gctattggagatccgcttggtttatcataggta |
154 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
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| T |
11701594 |
gttattggagatccgcttggtttatcataggta |
11701626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 11778637 - 11778710
Alignment:
| Q |
82 |
gttgactacagaggacaaactgccgttagatccaaaactggctattggagatccgcttggtttatcataggtac |
155 |
Q |
| |
|
||||| || ||||||||| ||||| | ||||||||| |||| |||||| |||||||||||||||||||||||| |
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| T |
11778637 |
gttgattatagaggacaacctgccatcagatccaaatctggttattggctatccgcttggtttatcataggtac |
11778710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 11797235 - 11797282
Alignment:
| Q |
109 |
agatccaaaactggctattggagatccgcttggtttatcataggtact |
156 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
11797235 |
agatccaaatctggttattggcgatccgcttggtttatcataggtact |
11797282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 301 - 493
Target Start/End: Original strand, 16426 - 16618
Alignment:
| Q |
301 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
400 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||| | ||||||||| ||||||| ||| ||| | || || |||||||||||||||||||||||||||| |
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| T |
16426 |
aatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactca |
16525 |
T |
|
| Q |
401 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
493 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
16526 |
aacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgattctt |
16618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 15781 - 15914
Alignment:
| Q |
22 |
ttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaactg |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
15781 |
ttgatggcagaatcaaacgaagtgttgttagaagctgaattagctactgttgatggagtcgttgactacagaggacaacctgccgttaggtccaaatctg |
15880 |
T |
|
| Q |
122 |
gctattggagatccgcttggtttatcataggtac |
155 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |
|
|
| T |
15881 |
gttactggagatccgcttggtttatcataggtac |
15914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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