View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_4 (Length: 436)
Name: NF11223_low_4
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 1193178 - 1193035
Alignment:
| Q |
1 |
taatggaataacaacattcaagagctttccttgataatgtttgtaaaattaaaacgtgcaggaagagaggagaaagtaattattttccataaatgaaagg |
100 |
Q |
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| T |
1193178 |
taatggaataacaacattgaagagctttccttgataatgtttgtaaaattaaaacgtgcaggaagagaggagaaagtaattattttccttaaatgaaagg |
1193079 |
T |
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| Q |
101 |
gagaaaaatcagattttgtttggaatcattaaagaaggattatg |
144 |
Q |
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| T |
1193078 |
gagaaaaatcagattttgtttggaatcattaaagaaggattatg |
1193035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 187 - 364
Target Start/End: Complemental strand, 1192910 - 1192737
Alignment:
| Q |
187 |
ttgaaacataccaggggagagagatatggaaataaaggagtagtggaaatcatagatagatactgaagaaaataaggaatgggttattctagagaaaaat |
286 |
Q |
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| T |
1192910 |
ttgaaacataccaggggagagagtaatggaaataaaggagtagtggaaatcatagata----ccgaagaaaataaggaataggttattctaaagaaaaat |
1192815 |
T |
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| Q |
287 |
aaggaaaatcaagtttataggagttagtcactatgtgatatagcttaaatcatggtatacataactaaccactaacta |
364 |
Q |
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| T |
1192814 |
aaggaaaatcaagtttataggggttagtcactgtgtgatatagcttaaatcatggtatacataactaaccactaacta |
1192737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 1193007 - 1192959
Alignment:
| Q |
139 |
attatgagagagggaatatggcgtgttatactgttatatatatgtgttt |
187 |
Q |
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| T |
1193007 |
attatgagagagggaatatggcgtgttatactgttatatatatgtgttt |
1192959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 17543424 - 17543506
Alignment:
| Q |
59 |
caggaagagaggagaaagtaattattttccataaatgaaagggagaaaaatcagattttgtttggaatcattaaagaaggattatg |
144 |
Q |
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| T |
17543424 |
caggaagagagaagaaagtaattcttttccttaaatgagaga---aaaaatcagattctgtttggaagcattaaagaaggattatg |
17543506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 52016353 - 52016309
Alignment:
| Q |
100 |
ggagaaaaatcagattttgtttggaatcattaaagaaggattatg |
144 |
Q |
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| T |
52016353 |
ggaggaaaatcagattttgtttggaatcattaaggaatgattatg |
52016309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 18474795 - 18474829
Alignment:
| Q |
327 |
tagcttaaatcatggtatacataactaaccactaa |
361 |
Q |
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| T |
18474795 |
tagcttaaatcatggtatatataactaaccactaa |
18474829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 18474712 - 18474753
Alignment:
| Q |
263 |
gaatgggttattctagagaaaaataaggaaaatcaagtttat |
304 |
Q |
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| T |
18474712 |
gaataggttattctagagaaaaataaggaagaccaagtttat |
18474753 |
T |
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