View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_5 (Length: 416)
Name: NF11223_low_5
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 4 - 400
Target Start/End: Original strand, 39577567 - 39577974
Alignment:
| Q |
4 |
gagagagaagaagtaagaacataagatgagtgtgagagggttgttctaaaatgattgtacaaatataatttcttgcgagcaagagccagaaattcgaaca |
103 |
Q |
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| T |
39577567 |
gagagagaaggagtaagaacataagatgagtgtgagagggttgttctaaaatgattgtacaaatataatttcttgcgagcaagagcgagaaattcgaacg |
39577666 |
T |
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| Q |
104 |
accaagaaattcttgcatgtgcgatgaagttactgtattctggtcacactactgtttggataagagattcagataggaagctttgtgttgcttaagaaaa |
203 |
Q |
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| T |
39577667 |
accaagaaattcttgcatgtgcgatgaagttactgtattctggtcatactactgtttggataagagattcagataggaagctttgtgttgcttaagaaaa |
39577766 |
T |
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| Q |
204 |
ggtaaacattaagttccattttatttattgcatcacagcgtgatatatgaaagtgttatttcttcttaattgaaccaatgccttcaattgccttcaattt |
303 |
Q |
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| T |
39577767 |
ggtaaacattaagttccattttatttattgcatcacagcgtgatatatgaaagtgttatttcttcttaattgaaccaatgccttcaattgccttcaattt |
39577866 |
T |
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| Q |
304 |
tctaatattaatcataagatgcttgtg-----------tgcatagatcaacaatctatcaaaacttggaactatagtattatattcttttgcctacctac |
392 |
Q |
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| T |
39577867 |
tctaatattaatcataagatgcttgtgacttggtctactgcatagatcaacaatctatcaaaacttggaactatagtattatatgcttttgcctacctac |
39577966 |
T |
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| Q |
393 |
atgcttac |
400 |
Q |
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| T |
39577967 |
atgcttac |
39577974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 39541666 - 39541720
Alignment:
| Q |
155 |
ctgtttggataagagattcagataggaagctttgtgttgcttaagaaaaggtaaa |
209 |
Q |
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| T |
39541666 |
ctgtttgcttaagagattcagataggaagctctgtgttgcttatgaaaaggtaaa |
39541720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 39541747 - 39541778
Alignment:
| Q |
261 |
atttcttcttaattgaaccaatgccttcaatt |
292 |
Q |
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| T |
39541747 |
atttcttcttaattgaaccaatgccttcaatt |
39541778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 39541822 - 39541859
Alignment:
| Q |
335 |
tagatcaacaatctatcaaaacttggaactatagtatt |
372 |
Q |
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| T |
39541822 |
tagatcaacaatctatcaatacttggaactattgtatt |
39541859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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