View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_6 (Length: 377)
Name: NF11223_low_6
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 177 - 370
Target Start/End: Original strand, 43781793 - 43781986
Alignment:
| Q |
177 |
aaaaatcaaggacaacattgaaatcgcctgaaatttattatctttgcttaatttttataaaacctctgcttataatttttataaatatactgaaactggt |
276 |
Q |
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| T |
43781793 |
aaaaatcaaggacaacattgaaatcgcctgaaatttactatctttgcttaatttttataaaacctctgcttataatttttataaatatactgaaactggt |
43781892 |
T |
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| Q |
277 |
aaagacaagtttccacctaccatatgatttaaattcttattatccaatttcacggtccatgtttttgtaaattttgcttatgcctttcatctca |
370 |
Q |
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| T |
43781893 |
aaagacaagtttccacctaccatatgatttaaattcttattatccaatttcacggtccatgtttttgtaaattttgcttatgcctttcatctca |
43781986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 43781656 - 43781793
Alignment:
| Q |
16 |
atatatgtcgattttgtatctggagacgtggcagtgatgtggagtcaatatagattatcacatcttcgttatcgtgtcaatgaatgttgactaccgtttg |
115 |
Q |
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| T |
43781656 |
atatatgtcgattttgtatctggagacgtggcagtgatgtggagtcaatatagattatcacatcttctttatcgtgtcaatgaatgttgactaccgtttg |
43781755 |
T |
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| Q |
116 |
aacttaacagagggaccattttgattcatgtgttgcaa |
153 |
Q |
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| T |
43781756 |
aacttaacagagggaccattttgattcatgtgttgcaa |
43781793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 15957552 - 15957655
Alignment:
| Q |
263 |
atactgaaactggtaaagacaagtttccacctaccatatgatttaaattcttattatccaatttcacggtccatgtttttgtaaattttgcttatgcctt |
362 |
Q |
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| T |
15957552 |
atactgaaactggtaaagacaaatttccaactgccatatgaattaaattgcttttatccaatttcacggtccatgtttttgttaattttgcttatgcttt |
15957651 |
T |
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| Q |
363 |
tcat |
366 |
Q |
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|||| |
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| T |
15957652 |
tcat |
15957655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 15957387 - 15957464
Alignment:
| Q |
114 |
tgaacttaacagagggaccattttgattcatgtgttgcaattttaggaatgatgctatttcgtaaaaatcaaggacaa |
191 |
Q |
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| T |
15957387 |
tgaacttaacaaagggaccaatttgattgatgtgttacattttcaggaacgaagctaatttgtagaagtcaaggacaa |
15957464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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