View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11223_low_7 (Length: 370)

Name: NF11223_low_7
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11223_low_7
NF11223_low_7
[»] chr3 (18 HSPs)
chr3 (194-351)||(6806730-6806887)
chr3 (199-353)||(13719299-13719452)
chr3 (197-353)||(13723196-13723351)
chr3 (223-352)||(26137095-26137223)
chr3 (198-319)||(4099570-4099691)
chr3 (1-118)||(2469130-2469244)
chr3 (148-198)||(2469263-2469313)
chr3 (227-318)||(23619200-23619291)
chr3 (148-198)||(17755975-17756025)
chr3 (148-198)||(19057295-19057345)
chr3 (75-132)||(25917311-25917367)
chr3 (148-198)||(25917251-25917301)
chr3 (258-315)||(2185253-2185310)
chr3 (149-198)||(25937959-25938008)
chr3 (76-132)||(9240678-9240733)
chr3 (148-184)||(25716735-25716771)
chr3 (317-347)||(23619303-23619333)
chr3 (153-193)||(9240618-9240658)
[»] chr8 (8 HSPs)
chr8 (197-353)||(91580-91735)
chr8 (198-353)||(86264-86418)
chr8 (198-353)||(19802735-19802889)
chr8 (198-353)||(29010926-29011080)
chr8 (75-129)||(31249234-31249287)
chr8 (265-351)||(26491885-26491980)
chr8 (90-132)||(38294842-38294883)
chr8 (149-198)||(31249173-31249222)
[»] chr5 (6 HSPs)
chr5 (197-353)||(12842727-12842882)
chr5 (198-353)||(37023071-37023225)
chr5 (209-319)||(24092264-24092374)
chr5 (91-132)||(7779639-7779679)
chr5 (75-132)||(14854423-14854479)
chr5 (148-198)||(14854491-14854541)
[»] chr6 (10 HSPs)
chr6 (197-353)||(16772610-16772765)
chr6 (197-353)||(32708005-32708160)
chr6 (198-353)||(16777946-16778100)
chr6 (198-353)||(32703638-32703783)
chr6 (75-132)||(16799376-16799432)
chr6 (148-198)||(24223336-24223386)
chr6 (149-183)||(33482201-33482235)
chr6 (75-124)||(12296071-12296119)
chr6 (75-124)||(24223403-24223451)
chr6 (75-131)||(17079876-17079931)
[»] scaffold0015 (2 HSPs)
scaffold0015 (198-353)||(29671-29825)
scaffold0015 (197-353)||(24355-24510)
[»] chr1 (13 HSPs)
chr1 (198-353)||(2797149-2797303)
chr1 (198-353)||(42375121-42375275)
chr1 (197-353)||(2790719-2790874)
chr1 (198-352)||(21010542-21010705)
chr1 (251-351)||(24567489-24567598)
chr1 (209-352)||(394908-395060)
chr1 (148-198)||(23482460-23482510)
chr1 (148-198)||(41461095-41461145)
chr1 (149-198)||(46533152-46533201)
chr1 (148-184)||(41462764-41462800)
chr1 (160-198)||(47791184-47791222)
chr1 (149-198)||(11928469-11928518)
chr1 (76-124)||(41462694-41462741)
[»] chr7 (15 HSPs)
chr7 (198-353)||(11708868-11709022)
chr7 (197-353)||(11716383-11716538)
chr7 (209-352)||(13160345-13160488)
chr7 (197-352)||(13166800-13166944)
chr7 (226-352)||(37063012-37063140)
chr7 (148-198)||(16376293-16376343)
chr7 (75-132)||(34988798-34988854)
chr7 (76-132)||(4455545-4455600)
chr7 (148-184)||(4455613-4455649)
chr7 (75-131)||(24788657-24788712)
chr7 (148-198)||(41279079-41279129)
chr7 (75-124)||(16376362-16376410)
chr7 (151-184)||(46263837-46263870)
chr7 (148-184)||(38694699-38694735)
chr7 (76-132)||(41279013-41279068)
[»] chr4 (7 HSPs)
chr4 (197-353)||(14026807-14026964)
chr4 (197-241)||(14023866-14023910)
chr4 (72-132)||(9711381-9711440)
chr4 (148-184)||(11874824-11874860)
chr4 (76-132)||(19553442-19553497)
chr4 (151-183)||(29013705-29013737)
chr4 (148-193)||(46883538-46883587)
[»] chr2 (10 HSPs)
chr2 (271-353)||(20925535-20925617)
chr2 (223-319)||(36314767-36314863)
chr2 (148-198)||(15253523-15253573)
chr2 (223-310)||(37758843-37758931)
chr2 (148-184)||(17930301-17930337)
chr2 (148-198)||(15256378-15256428)
chr2 (148-198)||(27351856-27351906)
chr2 (75-132)||(17930350-17930406)
chr2 (76-132)||(11131420-11131475)
chr2 (148-184)||(24129578-24129614)
[»] scaffold0090 (1 HSPs)
scaffold0090 (75-129)||(12353-12406)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 194 - 351
Target Start/End: Complemental strand, 6806887 - 6806730
Alignment:
Q  194 ttaatgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataagg 293  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6806887 ttaatgatacagagtaagacattaatatgacatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataagg 6806788  T
Q  294 ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaatta 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6806787 ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaatta 6806730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 199 - 353
Target Start/End: Complemental strand, 13719452 - 13719299
Alignment:
Q  199 gatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 298  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13719452 gatacagagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccttactattgacaataaggccaac 13719354  T
Q  299 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13719353 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 13719299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 13723351 - 13723196
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  13723351 atgatacacagtaagacattaatatgacatagactttgcagccaccaccc-tatatgttagctttccaattccaccaccctactatttacaataaggcca 13723253  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13723252 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 13723196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 223 - 352
Target Start/End: Complemental strand, 26137223 - 26137095
Alignment:
Q  223 gcatagactttgcagccaccacccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttac 321  Q
    |||||||||||||||||||||||| ||| ||||||||   || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  26137223 gcatagactttgcagccaccaccc-tatcatgctagcac-cctattccaccaccctactattgacaataaggccaacaagtcaccatatttgacatttac 26137126  T
Q  322 tagattgtgtttccattgatgtattaattat 352  Q
    |||||||||||||||||||||||||||||||    
T  26137125 tagattgtgtttccattgatgtattaattat 26137095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 4099570 - 4099691
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| | ||||||||| |||||||||||||||| |||||||||||    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  4099570 tgatacagagcaagacattactatggcatagactttgtagccaccaccctaccatgctagctttcctattccaccaccctactattgacaataaggccaa 4099669  T
Q  298 caagccaccatgtttgacattt 319  Q
    ||||||||||| ||||||||||    
T  4099670 caagccaccatttttgacattt 4099691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2469130 - 2469244
Alignment:
Q  1 ttggaaactacatgaattgattgatatatggacttcctctaaaattcagccatccctgatatttctccctatctcttttcattgctaccctgttgtgtca 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||   ||||||||||||||||| ||||||||    
T  2469130 ttggaaactacatgaattgattaatatatggacttcctctaaaattcagcaatccctaatatttctcccta--ccttttcattgctaccctattgtgtca 2469227  T
Q  101 tcgttttgtatatatcta 118  Q
    ||| ||||||||||||||    
T  2469228 tcg-tttgtatatatcta 2469244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 2469263 - 2469313
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2469263 gacaagttgttgtacacttatttaatacgtttacaaatagactaccttaat 2469313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 23619200 - 23619291
Alignment:
Q  227 agactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatt 318  Q
    ||||||||| ||||||||||    ||||||| ||||| ||||||||| ||||||||||||  |||||| ||||||||| |||||||||||||    
T  23619200 agactttgcggccaccaccctaccatgctagttttcccattccaccatcctactattgactttaaggcaaacaagccatcatgtttgacatt 23619291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 17755975 - 17756025
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  17755975 gacaagttgttgtacacttatttaatacgtttacaattagactaccctaat 17756025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 19057295 - 19057345
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  19057295 gacaagttgttgtacacttatttaatacgtttacaattagactaccctaat 19057345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 25917367 - 25917311
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  25917367 cttttcattcctatcctgttgtgtcatcgttt-gtatatatctattgtttctgtagac 25917311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 25917301 - 25917251
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  25917301 gacaagttgttgtacacttatttaatacgtttacaaacagaataccctaat 25917251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 2185253 - 2185310
Alignment:
Q  258 ctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgac 315  Q
    |||||| ||||||||||||||||||||||  |||||| |||||| || ||||||||||    
T  2185253 ctttcccattccaccaccctactattgactttaaggcaaacaagtcatcatgtttgac 2185310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 25937959 - 25938008
Alignment:
Q  149 acaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  25937959 acaagttgttgtacacttatttaatacgtttacaaacagaataccctaat 25938008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 9240733 - 9240678
Alignment:
Q  76 ttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||||||| ||| | |||||||||||||||| ||||||||||||||||| |||||||    
T  9240733 ttttcattcctatcatgttgtgtcatcgttt-gtatatatctattgtttctgtagac 9240678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 25716771 - 25716735
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    |||||||||||||||| ||||||||||||||||||||    
T  25716771 gacaagttgttgtacacttatttaatacgtttacaaa 25716735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 23619303 - 23619333
Alignment:
Q  317 tttactagattgtgtttccattgatgtatta 347  Q
    |||||||||||||||||||||||||||||||    
T  23619303 tttactagattgtgtttccattgatgtatta 23619333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 9240658 - 9240618
Alignment:
Q  153 gttgttgtacatttatttaatacgtttacaaatagactacc 193  Q
    ||||||||||| |||||||||||||||||||| ||| ||||    
T  9240658 gttgttgtacacttatttaatacgtttacaaacagaatacc 9240618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 91580 - 91735
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  91580 atgatacagagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggcca 91678  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  91679 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 91735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 86264 - 86418
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86264 tgatacagagtaagacattaatatggcatagactttgcagctaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 86362  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86363 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 86418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 19802735 - 19802889
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19802735 tgatacagagtaagacattaatatggcatagagttttcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 19802833  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19802834 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 19802889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 29011080 - 29010926
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29011080 tgatacagagtaagactttaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactatcgacaataaggccaa 29010982  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29010981 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 29010926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 31249287 - 31249234
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgta 129  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||    
T  31249287 cttttcattcctatcctgttgtgtcatcg-tttgtatatatctattgtttctgta 31249234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 26491980 - 26491885
Alignment:
Q  265 attccaccaccctactattgacaataaggccaacaagccaccatgtttgaca---------tttactagattgtgtttccattgatgtattaatta 351  Q
    |||| ||||||||||| ||||   |||||| |||||| ||||||||||||||         |||||||||||||||||| ||||||||||||||||    
T  26491980 attctaccaccctactgttgattttaaggcaaacaagtcaccatgtttgacaatgtctatttttactagattgtgtttcaattgatgtattaatta 26491885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 38294883 - 38294842
Alignment:
Q  90 ctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  38294883 ctgttgtgtcatcgttt-gtatatatctattgtttatgtagac 38294842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 31249222 - 31249173
Alignment:
Q  149 acaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||| |||||||||| |||||||||||||||||||| ||| |||| ||||    
T  31249222 acaaattgttgtacacttatttaatacgtttacaaacagaataccctaat 31249173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 12842727 - 12842882
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12842727 atgatacagagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggcca 12842825  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12842826 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 12842882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 37023225 - 37023071
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37023225 tgatacagagtaagactttaatatggcatagattttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 37023127  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37023126 caagccaccatatttgacatttactagattgtgtttccattgatgtattaattatc 37023071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 24092374 - 24092264
Alignment:
Q  209 aagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccat 308  Q
    ||||||||| ||||||||||||||||||||||||||||    ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||    
T  24092374 aagacattactatggcatagactttgcagccaccaccctaccatgctagctttcctagttcaccaccctactattgacaataaggccaacaagccaccat 24092275  T
Q  309 gtttgacattt 319  Q
    |||||||||||    
T  24092274 gtttgacattt 24092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 7779639 - 7779679
Alignment:
Q  91 tgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  7779639 tgttgtgtcatcgttt-gtatatatctattgtttttgtagac 7779679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 14854423 - 14854479
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    ||||||||| ||| | |||||||||||||||| ||||||||||||||||| |||||||    
T  14854423 cttttcattcctatcttgttgtgtcatcgttt-gtatatatctattgtttatgtagac 14854479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 14854491 - 14854541
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||| ||||||| |||||||||||||||||||| | | |||||||||    
T  14854491 gacaagttattgtacacttatttaatacgtttacaaacaaaataccttaat 14854541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 16772765 - 16772610
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16772765 atgatacagagtaagactttaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggcca 16772667  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16772666 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 16772610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 32708005 - 32708160
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32708005 atgatacagagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggcca 32708103  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32708104 acaagccaccatgtttgacatttactagattgtgtttccattgatatattaattatc 32708160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 16778100 - 16777946
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16778100 tgatacagagtaaaactttaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 16778002  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16778001 caagccaccatatttgacatttactagattgtgtttccattgatgtattaattatc 16777946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 32703638 - 32703783
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         |||    
T  32703638 tgatatagagtaagacactaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattga---------caa 32703727  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32703728 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 32703783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 16799432 - 16799376
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  16799432 cttttcatttctatcctgttgtgtcatcgttt-gtatatatctattgtttctgtagac 16799376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 24223386 - 24223336
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| ||||||||||| |||||||| ||| |||| ||||    
T  24223386 gacaagttgttgtacacttatttaatacatttacaaacagaataccctaat 24223336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 33482235 - 33482201
Alignment:
Q  149 acaagttgttgtacatttatttaatacgtttacaa 183  Q
    ||||||||||||||| |||||||||||||||||||    
T  33482235 acaagttgttgtacacttatttaatacgtttacaa 33482201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 12296071 - 12296119
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgttt 124  Q
    ||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  12296071 cttttcattcctatcatgttgtgtcatcg-tttgtatatatctattgttt 12296119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 24223451 - 24223403
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgttt 124  Q
    ||||||||| ||| | |||||||||||||||| |||||||||||||||||    
T  24223451 cttttcattcctatcatgttgtgtcatcgttt-gtatatatctattgttt 24223403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 17079931 - 17079876
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtaga 131  Q
    ||||||||| ||| ||||||||||||||| |||||| |||| |||||||| ||||||    
T  17079931 cttttcattcctatcctgttgtgtcatcg-tttgtaaatatttattgtttctgtaga 17079876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 29825 - 29671
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29825 tgatacagagtaagactttaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 29727  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29726 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 29671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 24510 - 24355
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24510 atgatacagagtaagactttaatatcgcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggcca 24412  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24411 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 24355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 2797303 - 2797149
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797303 tgatacagagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 2797205  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797204 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 2797149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 42375121 - 42375275
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375121 tgatacagagtaagactttaatatggcatagactttgcagccaccaccc-tatatgctagctttccaattccaccaccctactattgacaataaggccaa 42375219  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375220 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 42375275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 2790874 - 2790719
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2790874 atgatacaaagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctagctttccaatttcaccaccctactattgacaataaggcca 2790776  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790775 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 2790719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 21010705 - 21010542
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| | |||||||| |||||||||||||||||||| ||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  21010705 tgatacagagaaagacattcatatggcatagactttgcagtcaccaccctaccatgctagctttccaatttcaccaccctactattgacaataaggccaa 21010606  T
Q  298 caagccaccatgtttgaca---------tttactagattgtgtttccattgatgtattaattat 352  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||    
T  21010605 caagccaccatgtttgacaatatctatttttactagattgtgtttccattgatgtgttaattat 21010542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 24567598 - 24567489
Alignment:
Q  251 atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgaca---------tttactagattgtgtttccattgat 341  Q
    ||||||| ||| | ||||||||||||||||||||||  |||| | |||||||||||||||||||||         |||||||||||||||||||| | ||    
T  24567598 atgctagtttttccattccaccaccctactattgactttaagccaaacaagccaccatgtttgacaatatctatttttactagattgtgtttccaattat 24567499  T
Q  342 gtattaatta 351  Q
    ||||||||||    
T  24567498 gtattaatta 24567489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 395060 - 394908
Alignment:
Q  209 aagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccat 308  Q
    |||||||| | || |||||||||| |||| |||||| |    ||||| ||||||| |||||| ||| |||||||||||  |||| | || |||||| |||    
T  395060 aagacattcaaatagcatagacttcgcagacaccactctaccatgctggctttcccattccatcactctactattgactttaagccaaataagccatcat 394961  T
Q  309 gtttgaca---------tttactagattgtgtttccattgatgtattaattat 352  Q
    ||||||||         ||||||||||||||||||||||||||||||||||||    
T  394960 gtttgacaatatctatttttactagattgtgtttccattgatgtattaattat 394908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 23482510 - 23482460
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  23482510 gacaagttgttgtacacttatttaatacgtttacaaacagaataccctaat 23482460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 41461095 - 41461145
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  41461095 gacaagttgttgtacacttatttaatacgtttacaaacagaataccctaat 41461145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 46533152 - 46533201
Alignment:
Q  149 acaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  46533152 acaagttgttgtacacttatttaatacgtttacaaacagaataccctaat 46533201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 41462764 - 41462800
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41462764 gacaagttgttgtacacttatttaatacgtttacaaa 41462800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 47791184 - 47791222
Alignment:
Q  160 tacatttatttaatacgtttacaaatagactaccttaat 198  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  47791184 tacatttatttaatacgtttacaaatagaataccctaat 47791222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 11928469 - 11928518
Alignment:
Q  149 acaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    ||||||||||||||| ||||||||||| |||||||| ||| |||| ||||    
T  11928469 acaagttgttgtacacttatttaatacttttacaaacagaataccctaat 11928518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 41462694 - 41462741
Alignment:
Q  76 ttttcattgctaccctgttgtgtcatcgttttgtatatatctattgttt 124  Q
    |||||||| ||| | |||||||||||||||| |||||||||||||||||    
T  41462694 ttttcattcctatcatgttgtgtcatcgttt-gtatatatctattgttt 41462741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 11708868 - 11709022
Alignment:
Q  198 tgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 297  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  11708868 tgatacagagtaagacattaatatagcatagactttgcagccaccaccc-tatatgctagctttccaattccacaaccctattattgacaataaggccaa 11708966  T
Q  298 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11708967 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 11709022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 11716383 - 11716538
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  11716383 atgatacagagtaagacattaatatgacatagactttgcagccaccaccc-tatatgctagcttttcaattccacaaccctattattgacaataaggcca 11716481  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11716482 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 11716538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 13160345 - 13160488
Alignment:
Q  209 aagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccat 308  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  13160345 aagacattaatatggcatagactttgcagccaccaccctaccatgctagctttccaattccaccaccctactattgaaaataaggccaacaagcctccat 13160444  T
Q  309 gtttgacatttactagattgtgtttccattgatgtattaattat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13160445 gtttgacatttactagattgtgtttccattgatgtattaattat 13160488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 197 - 352
Target Start/End: Original strand, 13166800 - 13166944
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 296  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||||| |    |||||| |||||||||||||||||||||||||||||||||||||||    
T  13166800 atgatacagagcaagacattaatatggcatagaatttgcagccaccacgctaccatgctacctttccaattccaccaccctactattgacaataaggcca 13166899  T
Q  297 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 352  Q
    |||           |||||||||||||||||||||||||||| |||||||||||||    
T  13166900 aca-----------ttgacatttactagattgtgtttccatttatgtattaattat 13166944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 352
Target Start/End: Original strand, 37063012 - 37063140
Alignment:
Q  226 tagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgaca--------- 316  Q
    |||||||||||||||||||||    ||||||||||||| |||||| ||||||||| |||      || |||||||||||||||||||||||             
T  37063012 tagactttgcagccaccaccctaccatgctagctttcccattccatcaccctact-ttg------agaccaacaagccaccatgtttgacaatatctatt 37063104  T
Q  317 tttactagattgtgtttccattgatgtattaattat 352  Q
    |||||| |||||||||| ||||||||||||||||||    
T  37063105 tttactggattgtgttttcattgatgtattaattat 37063140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 16376343 - 16376293
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  16376343 gacaagttgttgtacacttatttaatacgtttacaaacagaataccctaat 16376293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 34988854 - 34988798
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||||||||  || |||||||||||||||||| ||||||||||||||||| |||||||    
T  34988854 cttttcattcatatcctgttgtgtcatcgttt-gtatatatctattgtttctgtagac 34988798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 4455545 - 4455600
Alignment:
Q  76 ttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||| ||| |||||||    
T  4455545 ttttcattcctatcctgttgtgtcatcg-tttgtatatatctattatttctgtagac 4455600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 4455613 - 4455649
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4455613 gacaagttgctgtacatttatttaatacgtttacaaa 4455649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 24788712 - 24788657
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtaga 131  Q
    ||||||||| ||| |||||||||| ||||||| ||||||||||||||||| ||||||    
T  24788712 cttttcattcctatcctgttgtgttatcgttt-gtatatatctattgtttctgtaga 24788657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 41279079 - 41279129
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| ||||||||||| |||||||| ||| |||| ||||    
T  41279079 gacaagttgttgtacacttatttaatacatttacaaacagaataccctaat 41279129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 16376410 - 16376362
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgttt 124  Q
    ||||||||| ||| | |||||||||||||||| |||||||||||||||||    
T  16376410 cttttcattcctatcatgttgtgtcatcgttt-gtatatatctattgttt 16376362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 46263870 - 46263837
Alignment:
Q  151 aagttgttgtacatttatttaatacgtttacaaa 184  Q
    ||||||||||||| ||||||||||||||||||||    
T  46263870 aagttgttgtacacttatttaatacgtttacaaa 46263837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 38694735 - 38694699
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  38694735 gacaaattgttgtacacttatttaatacgtttacaaa 38694699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 41279013 - 41279068
Alignment:
Q  76 ttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||||||| ||| | ||||||||||||||||  |||||||||||||||| |||||||    
T  41279013 ttttcattcctatcatgttgtgtcatcgttta-tatatatctattgtttctgtagac 41279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 14026807 - 14026964
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccaccacccctatatgctagctttccaattccaccaccc--tactattgacaataaggc 294  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  14026807 atgatacagagtaagacattaatatggcatagactttgcagccaccaccc-tatatgctaactttccaattccaccaccccctactattgacaataaggc 14026905  T
Q  295 caacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14026906 caacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 14026964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 14023866 - 14023910
Alignment:
Q  197 atgatacagggtaagacattaatatggcatagactttgcagccac 241  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  14023866 atgatacagagtaagacattaatatggcatagactttgcagccac 14023910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 9711381 - 9711440
Alignment:
Q  72 tctcttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||| ||||||| ||| | ||||||||||||| || ||||||||||||||||| |||||||    
T  9711381 tctcctttcatttctatcttgttgtgtcatcgctt-gtatatatctattgtttatgtagac 9711440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 11874860 - 11874824
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    ||||||||||||||||  |||||||||||||||||||    
T  11874860 gacaagttgttgtacacatatttaatacgtttacaaa 11874824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 19553442 - 19553497
Alignment:
Q  76 ttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    ||||||||  || |||||||| ||||||||| ||||||||||||||||| |||||||    
T  19553442 ttttcattcttatcctgttgtttcatcgttt-gtatatatctattgtttctgtagac 19553497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 29013737 - 29013705
Alignment:
Q  151 aagttgttgtacatttatttaatacgtttacaa 183  Q
    ||||| |||||||||||||||||||||||||||    
T  29013737 aagttattgtacatttatttaatacgtttacaa 29013705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 46883538 - 46883587
Alignment:
Q  148 gacaagttgttgtaca----tttatttaatacgtttacaaatagactacc 193  Q
    ||||||||||||||||    ||||||||||||||||||||||||| ||||    
T  46883538 gacaagttgttgtacacctatttatttaatacgtttacaaatagaatacc 46883587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 20925617 - 20925535
Alignment:
Q  271 ccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20925617 ccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatc 20925535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 36314863 - 36314767
Alignment:
Q  223 gcatagactttgcagccaccacccctat-atgctagctttccaattccaccaccctactattga-caataaggccaacaagccaccatgtttgacattt 319  Q
    ||||| |||||||||||||||||  ||  ||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  36314863 gcataaactttgcagccaccacc--taccatgctagctttcctattccaccaccctaatattgaacaataaggccaacaaaccaccatgtttgacattt 36314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 15253573 - 15253523
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  15253573 gacaagttgttgtacacttatttaatacgtttacaaatagaataccttaat 15253523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 37758843 - 37758931
Alignment:
Q  223 gcatagactttgcagccaccacccctat-atgctagctttccaattccaccaccc-tactattgacaataaggccaacaagccaccatgt 310  Q
    ||||||||||||||||||||| || ||| ||||||||||||  |||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  37758843 gcatagactttgcagccaccaacc-tatcatgctagctttctcattccaccacccctactattgactttaatgccaacaagccaccatgt 37758931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 17930337 - 17930301
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17930337 gacaagttgttgtacacttatttaatacgtttacaaa 17930301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 15256428 - 15256378
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||| ||||||| |||||||||||||||||||| ||| |||| ||||    
T  15256428 gacaagttattgtacacttatttaatacgtttacaaacagaataccctaat 15256378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 27351906 - 27351856
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaatagactaccttaat 198  Q
    |||||||||||||||| ||||||||||| |||||||| ||| |||| ||||    
T  27351906 gacaagttgttgtacacttatttaatacatttacaaacagaataccctaat 27351856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 17930406 - 17930350
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    ||||||||| ||| | | |||||||||||||| ||||||||||||||||| |||||||    
T  17930406 cttttcattcctatcttattgtgtcatcgttt-gtatatatctattgtttctgtagac 17930350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 11131420 - 11131475
Alignment:
Q  76 ttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgtagac 132  Q
    |||||||| ||| | |||||||||||||||| |||||||| |||||||| |||||||    
T  11131420 ttttcattcctatcatgttgtgtcatcgttt-gtatatatttattgtttatgtagac 11131475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 24129578 - 24129614
Alignment:
Q  148 gacaagttgttgtacatttatttaatacgtttacaaa 184  Q
    |||||||||||||||| |||||||||| |||||||||    
T  24129578 gacaagttgttgtacacttatttaatatgtttacaaa 24129614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 12406 - 12353
Alignment:
Q  75 cttttcattgctaccctgttgtgtcatcgttttgtatatatctattgtttttgta 129  Q
    ||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||    
T  12406 cttttcattcctatcatgttgtgtcatcgttt-gtatatatctattgtttttgta 12353  T

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