View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11223_low_8 (Length: 313)
Name: NF11223_low_8
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11223_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 5329665 - 5329381
Alignment:
| Q |
10 |
aggagcagagaccaatactcaatcaatctcannnnnnncaattctatatgccaccacaaaattagtgttaattatcttgttttaatagatcaaattcatt |
109 |
Q |
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| T |
5329665 |
aggatcagaaaccaatactcaatcaatctcatttttt-caattctatatgcctccacaaaattagtgttaattatcttgtcttaatagatcaaattaatt |
5329567 |
T |
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| Q |
110 |
ccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattataactaatataacataatttgatgg |
209 |
Q |
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| T |
5329566 |
ccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattataactaatataacataatttgatgg |
5329467 |
T |
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| Q |
210 |
tctaaaagatcatgtagtagaaagaaaatatgagaagcatgtttagaaatgatttataannnnnnnattaaccgatgtgaaacatg |
295 |
Q |
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| T |
5329466 |
tctaaaagatcatgtagtagaaagaaaatatgagaagcatgtttagaaatgatttataatttttttattaaccgatgtgaaacatg |
5329381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 5335848 - 5335762
Alignment:
| Q |
146 |
tattgaagatttataaaatgtaccactcttttgcaattataactaatataacataatttgatggtctaaaagatcatgtagtagaaag |
233 |
Q |
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| T |
5335848 |
tattgaagatttataaa-tataccactcttttccaattgtaaatagtgtaatataatttgatagtctaaaatatcatgtagtataaag |
5335762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 5334901 - 5334825
Alignment:
| Q |
154 |
atttataaaatgtaccactcttttgcaattataactaatataacataatttgatggtctaaaagatcatgtagtagaaag |
233 |
Q |
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| T |
5334901 |
atttataaaatgtatcactcttttgcaattgcaattaacat---ataatttgatagtctaaaatatcatgtagtagaaag |
5334825 |
T |
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