View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11223_low_9 (Length: 292)

Name: NF11223_low_9
Description: NF11223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11223_low_9
NF11223_low_9
[»] chr5 (7 HSPs)
chr5 (63-285)||(38447074-38447296)
chr5 (101-285)||(38180608-38180792)
chr5 (101-285)||(38190339-38190523)
chr5 (101-285)||(38207832-38208016)
chr5 (101-285)||(38217564-38217748)
chr5 (101-285)||(38455968-38456152)
chr5 (101-282)||(26033464-26033645)
[»] chr1 (2 HSPs)
chr1 (65-285)||(38342371-38342593)
chr1 (65-285)||(38446564-38446786)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 63 - 285
Target Start/End: Complemental strand, 38447296 - 38447074
Alignment:
Q  63 gaaagtaaaacatgaacaaaaatacctcgcgagcgattttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38447296 gaaagtaaaacatgaacaaaaatacctcgcgagcgattttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttcttt 38447197  T
Q  163 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447196 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 38447097  T
Q  263 tcccaatttctggttccatgttt 285  Q
    |||||||||||||||||||||||    
T  38447096 tcccaatttctggttccatgttt 38447074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 38180792 - 38180608
Alignment:
Q  101 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 200  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38180792 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38180693  T
Q  201 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgttt 285  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| |||||||||||||||||||||    
T  38180692 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgttt 38180608  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 38190339 - 38190523
Alignment:
Q  101 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 200  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38190339 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38190438  T
Q  201 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgttt 285  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| |||||||||||||||||||||    
T  38190439 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgttt 38190523  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 38208016 - 38207832
Alignment:
Q  101 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 200  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38208016 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38207917  T
Q  201 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgttt 285  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| |||||||||||||||||||||    
T  38207916 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgttt 38207832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 38217564 - 38217748
Alignment:
Q  101 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 200  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38217564 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38217663  T
Q  201 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgttt 285  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| |||||||||||||||||||||    
T  38217664 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgttt 38217748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 38456152 - 38455968
Alignment:
Q  101 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 200  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38456152 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38456053  T
Q  201 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgttt 285  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| |||||||||||||||||||||    
T  38456052 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgttt 38455968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 26033464 - 26033645
Alignment:
Q  101 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 200  Q
    ||||||||||||||| |||||||||| |||   |||  ||| |||||  |||||||||||| |||||||||||||||||| ||| | |||   |||| ||    
T  26033464 ttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgat 26033563  T
Q  201 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatg 282  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || || |||||||||| ||||||||||||||||||    
T  26033564 tataccatcttagacgacaacttttaccgcaacgtataagcccggcatttttcgatacctcgttccaatttctggttccatg 26033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 285
Target Start/End: Complemental strand, 38342593 - 38342371
Alignment:
Q  65 aagtaaaacatgaacaaaaata--cctcgcgagcgattttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt 162  Q
    ||||||| ||||||||||||||  ||||| |||| || ||||||||||||||  ||||| ||||   |  ||||| ||||| ||| | ||||||||||||    
T  38342593 aagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttcttt 38342494  T
Q  163 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 262  Q
     ||||||||||||||| ||| | |||||| |||  |||||||||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||     
T  38342493 gctaaatggaccctttcttaaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctct 38342394  T
Q  263 tcccaatttctggttccatgttt 285  Q
    | |||||||| ||||||||||||    
T  38342393 ttccaatttccggttccatgttt 38342371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 285
Target Start/End: Complemental strand, 38446786 - 38446564
Alignment:
Q  65 aagtaaaacatgaacaaaaata--cctcgcgagcgattttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt 162  Q
    ||||||| ||||||||||||||  ||||| |||| || ||||||||||||||  ||||| ||||   |  ||||| ||||| ||| | ||||||||||||    
T  38446786 aagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttcttt 38446687  T
Q  163 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 262  Q
     ||||||||||||||| ||| | |||||| |||  |||||||||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||     
T  38446686 gctaaatggaccctttcttaaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctct 38446587  T
Q  263 tcccaatttctggttccatgttt 285  Q
    | |||||||| ||||||||||||    
T  38446586 ttccaatttccggttccatgttt 38446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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