View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11224_high_4 (Length: 328)
Name: NF11224_high_4
Description: NF11224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11224_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 39825336 - 39825626
Alignment:
| Q |
22 |
tgaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaa |
121 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825336 |
tgaagtaatgcaaaaaacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaa |
39825435 |
T |
|
| Q |
122 |
tcccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825436 |
tcccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaa |
39825535 |
T |
|
| Q |
222 |
gttccggcattggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttacttgtaaggatatatgttgtgtg |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39825536 |
gttatggcattggcatttatcatgtcaatctcaaaccggtacgcaatcctagtattggtaaattgttacatgtaaggatatatgttgtgtg |
39825626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 39805305 - 39805574
Alignment:
| Q |
22 |
tgaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaa |
121 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
39805305 |
tgaagtaatgcaaaaaacaaggtggtcttggaggaagttattggagtctgtatttggcaatgagataaaaaataataaatgcgacaaagttacccacaaa |
39805404 |
T |
|
| Q |
122 |
tcccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39805405 |
tcccctcactcttgcaacctctatgatagaaaaccagatttccaaaatagttatggttggagtgttgctctagacggttctgactattctccactcaaaa |
39805504 |
T |
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| Q |
222 |
gttccggcattggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttact |
291 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||| |||||| ||||| |
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| T |
39805505 |
gttccggcattggcatttatcacgtcaatctcaaaccagtacgcaattttagtattgttaaatttttact |
39805574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 39926890 - 39927131
Alignment:
| Q |
23 |
gaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaat |
122 |
Q |
| |
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||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||| |||| | ||||| ||| | || |||| |
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| T |
39926890 |
gaagtaaagcaaaagacaagttggtcttggaggaagctattggaatctgtatttggagatgaaatagaaaatatgaaaaaggacaatgttgcacataaat |
39926989 |
T |
|
| Q |
123 |
cccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaag |
222 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
39926990 |
cccctcgctcttgcaacctctatgacagaaaaccagatttcaaaaacagttatggttggagtgttgctctggacggttctgattattcaccacttaaaag |
39927089 |
T |
|
| Q |
223 |
ttccggcattggcatttatcatgtcaatctcaaaccggtacg |
264 |
Q |
| |
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||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
39927090 |
ttccggcgttggaatttatcacgtcaatctcaaaccggtacg |
39927131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 39910283 - 39910524
Alignment:
| Q |
23 |
gaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaat |
122 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||| ||| | ||||| ||| | || |||| |
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| T |
39910283 |
gaagtaaagcaaaagacaagttggtcttggaggaagctattggaatctgtatttggaaatgaaatagaaaatattaaaaaggacaaggttgcacataaat |
39910382 |
T |
|
| Q |
123 |
cccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaag |
222 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
39910383 |
cccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgttgctctagacggttctgattattcaccacttaaaag |
39910482 |
T |
|
| Q |
223 |
ttccggcattggcatttatcatgtcaatctcaaaccggtacg |
264 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||| |
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| T |
39910483 |
ttccggtgttggaatttatcacgtcaatctcaaaccggtacg |
39910524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 39921602 - 39921843
Alignment:
| Q |
23 |
gaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaat |
122 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||| |||| | ||||| ||| | || |||| |
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| T |
39921602 |
gaagtaaagcaaaaaacaagttggtcttggaggaagctattggaatctgtatttggaggtgaaatagaaaatatgaaaaaggacaaggttgcacataaat |
39921701 |
T |
|
| Q |
123 |
cccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaag |
222 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
39921702 |
cccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgttgctctagatggttctgattattcaccacttaaaag |
39921801 |
T |
|
| Q |
223 |
ttccggcattggcatttatcatgtcaatctcaaaccggtacg |
264 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
39921802 |
ttccggcgttggaatttatcacgtcaatctcaaaccggtacg |
39921843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 39901934 - 39902221
Alignment:
| Q |
23 |
gaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaat |
122 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| | | |||||||| |||||||| |||| |||||||||| |||| | ||||| ||| | || |||| |
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| T |
39901934 |
gaagtaaagcaaaaaacaagttggtcttggagggagcttttggaatcagtatttggagatgaaataaaaaatatgaaaaaggacaaggttgcacataaat |
39902033 |
T |
|
| Q |
123 |
cccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaag |
222 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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|
| T |
39902034 |
cccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgtttctctagacggttctgattattcaccacttaaaag |
39902133 |
T |
|
| Q |
223 |
ttccggcattggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttacttgtaaggatatatgttgtg |
310 |
Q |
| |
|
||| |||||||| ||||| ||||||||||| ||||||||||| | |||| ||||| ||||| ||| ||| || |||||| |||||| |
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|
| T |
39902134 |
ttctggcattggaatttaccatgtcaatcttaaaccggtacgctagcctattattgttaaatgtttatttgcaatgatataggttgtg |
39902221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 39813825 - 39814066
Alignment:
| Q |
23 |
gaagtaatgcaaataacaagttggtcttggaggaacttattggaatctgtatttggcaatgagataaaaaataagaaatacgacaaagttacccacaaat |
122 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||||||| | ||||||||||||||||| |||| ||| |||||| |||| | ||||| ||| | || |||| |
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| T |
39813825 |
gaagtaaagcaaacaacaaattggccttggaggaagcttttggaatctgtatttggagatgaaatagaaaatatgaaaaaggacaaggttgcacataaat |
39813924 |
T |
|
| Q |
123 |
cccctcactcttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaag |
222 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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|
| T |
39813925 |
cccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgtttctctagacggttctgattattcaccacttaaaag |
39814024 |
T |
|
| Q |
223 |
ttccggcattggcatttatcatgtcaatctcaaaccggtacg |
264 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||| |
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|
| T |
39814025 |
ttccggcgttggaatttatcacgtcaatctcaaaccggtacg |
39814066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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