View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11224_low_1 (Length: 539)
Name: NF11224_low_1
Description: NF11224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11224_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 190 - 527
Target Start/End: Complemental strand, 16297808 - 16297471
Alignment:
| Q |
190 |
gttgaataccgatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16297808 |
gttgaataccgatatcatctaattttgattatgcagaaccagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtac |
16297709 |
T |
|
| Q |
290 |
gtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
389 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16297708 |
gtatttttgctcaaagtcttgtggtttgaattggtatcaatattttcaacatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
16297609 |
T |
|
| Q |
390 |
ctgccattgctctctattgatgggcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgtaagtattttatcaagtttagttt |
489 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16297608 |
ctgccattgctctctattgatgtgcaaatttgctttgaatctcaaagcatcaagatgcaatttactttggatgatgtaagtattttatcaagtttagttt |
16297509 |
T |
|
| Q |
490 |
atttgttctggttctataattatagtttatctgatgtc |
527 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
16297508 |
atttgttctggttgtataattatagtttatctaatgtc |
16297471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 190 - 527
Target Start/End: Complemental strand, 16305510 - 16305173
Alignment:
| Q |
190 |
gttgaataccgatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16305510 |
gttgaataccgatatcatctaattttgattatgcagaaccagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtac |
16305411 |
T |
|
| Q |
290 |
gtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
389 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
16305410 |
gtatttttactcaaagtcttgtggtttgaattggtatcaatattttcaacatttttatgctattggcttactatttttgtatatgcagcttttgttaagc |
16305311 |
T |
|
| Q |
390 |
ctgccattgctctctattgatgggcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgtaagtattttatcaagtttagttt |
489 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16305310 |
ctgccattgctctctattgatgtgcaaatttgctttgaatctcaaagcatcaagatgcaatttactttggatgatgtaagtattttatcaagtttagttt |
16305211 |
T |
|
| Q |
490 |
atttgttctggttctataattatagtttatctgatgtc |
527 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
16305210 |
atttgttctggttgtataattatagtttatctaatgtc |
16305173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 16297980 - 16297861
Alignment:
| Q |
18 |
ggtactgcctcaggtatggtctgatgtgggagtttattctgagtgtttttatctgcttagtgggtctgtttgttgctggtagcagcgtgagtattgtgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16297980 |
ggtactgcctcaggtatggtctgatgtgggagttttttcagagtgtttttatctgcttagtgggtctgtttgttgctggtagcagcgtgagtattgtgtt |
16297881 |
T |
|
| Q |
118 |
ggttttgaggccagcatgtg |
137 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
16297880 |
ggttttgaggccagtatgtg |
16297861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 16305682 - 16305563
Alignment:
| Q |
18 |
ggtactgcctcaggtatggtctgatgtgggagtttattctgagtgtttttatctgcttagtgggtctgtttgttgctggtagcagcgtgagtattgtgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16305682 |
ggtactgcctcaggtatggtctgatgtgggagttttttcagagtgtttttatctgcttagtgggtctgtttgttgctggtagcagcgtgagtattgtgtt |
16305583 |
T |
|
| Q |
118 |
ggttttgaggccagcatgtg |
137 |
Q |
| |
|
||||||||||| || ||||| |
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|
| T |
16305582 |
ggttttgaggcaagtatgtg |
16305563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 190 - 527
Target Start/End: Complemental strand, 22895295 - 22894958
Alignment:
| Q |
190 |
gttgaataccgatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895295 |
gttgaataccgatatcatctaattttgattatgcagaaccagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
22895196 |
T |
|
| Q |
290 |
gtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
389 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
22895195 |
gtatttttcctcaaagtcttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatttgcagcttttgttaagc |
22895096 |
T |
|
| Q |
390 |
ctgccattgctctctattgatgggcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgtaagtattttatcaagtttagttt |
489 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22895095 |
ctgccattgctctctattgatgtgcaaatttgctttgaatctcaaagtatcaagatgcactttactttggatgatgtaagtattttatcaagtttagttt |
22894996 |
T |
|
| Q |
490 |
atttgttctggttctataattatagtttatctgatgtc |
527 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
22894995 |
atttgttctggttgtataattatagtttatctaatgtc |
22894958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 22895467 - 22895348
Alignment:
| Q |
18 |
ggtactgcctcaggtatggtctgatgtgggagtttattctgagtgtttttatctgcttagtgggtctgtttgttgctggtagcagcgtgagtattgtgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895467 |
ggtactgcctcaggtatggtctgatgtgggagttttttctgagtgtttttatctgcttagtgggtctgtttgttgctggtagcagcgtgagtattgtgtt |
22895368 |
T |
|
| Q |
118 |
ggttttgaggccagcatgtg |
137 |
Q |
| |
|
||||||||||| || ||||| |
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|
| T |
22895367 |
ggttttgaggctagtatgtg |
22895348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 200 - 344
Target Start/End: Complemental strand, 15976163 - 15976019
Alignment:
| Q |
200 |
gatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtaggtatttttgc |
299 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||| || |||| ||| || |||||||||||||||||| |||||||||| || | ||||||||||||| |
|
|
| T |
15976163 |
gatatcatctagttttgattatgcagaaccataagtttgatttcagtgaatttgagcagcttgtgatttgcatttgttgaaaacacataggtatttttgc |
15976064 |
T |
|
| Q |
300 |
tcaaagttttgtggtttgaattggtatcaatattttcatcatttt |
344 |
Q |
| |
|
|||| || |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
15976063 |
tcaatgtcttgtggtttgaatttgattcaatattttcaccatttt |
15976019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 526
Target Start/End: Complemental strand, 15974687 - 15974574
Alignment:
| Q |
413 |
gcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgtaagtattttatcaagtttagtttatttgttctggttctataattat |
512 |
Q |
| |
|
|||||||| |||||||| |||| | |||| ||| | |||||||||| |||| ||| ||||||||| ||||| ||||| | |||| || || |||||| |
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|
| T |
15974687 |
gcaaatttactttgaatttcaacgtatcatgatttattttactttggttgatacaagcattttatcatgtttattttatctagtctgtttgtaaaattat |
15974588 |
T |
|
| Q |
513 |
agtttatctgatgt |
526 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
15974587 |
agtttatctaatgt |
15974574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 15975939 - 15975863
Alignment:
| Q |
415 |
aaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgtaagtattttatcaagtttagtttat |
491 |
Q |
| |
|
|||||| ||||||||||||||| | | ||| | ||||||||||||| |||||| ||||||||| ||||| ||||| |
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|
| T |
15975939 |
aaatttactttgaatctcaaagtgttatgatcccttttactttggatgttgtaagcattttatcatgtttattttat |
15975863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 270 - 491
Target Start/End: Complemental strand, 3874009 - 3873779
Alignment:
| Q |
270 |
catttgttgataatatgtaggtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgt |
369 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||| || |||||||||||| | | |||||||||||| | |||| ||| | ||| |||| |||||| |
|
|
| T |
3874009 |
catttgttgaaaatacataggtattcttgctcaatgtcttgtggtttgaaattgattcaatattttcaccgttttcatgtttgtggtttaccgtttttgc |
3873910 |
T |
|
| Q |
370 |
atctgcagcttttgttaagcctgccattgctctctattgatgg---------gcaaatttgctttgaatctcaaagcatcaagatgcactttactttgga |
460 |
Q |
| |
|
|||||||||||| |||||| ||||| || | ||||| |||| ||||||||||||||||||| ||||||||| ||| || ||||||||||| |
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|
| T |
3873909 |
atctgcagctttaattaagcatgccaatgttgtctatggatgatgttaagttgcaaatttgctttgaatcttaaagcatcatgatccattttactttgga |
3873810 |
T |
|
| Q |
461 |
tgatgtaagtattttatcaagtttagtttat |
491 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |
|
|
| T |
3873809 |
tgatgtaagtattttatcatgtttattttat |
3873779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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