View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11224_low_2 (Length: 523)

Name: NF11224_low_2
Description: NF11224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11224_low_2
NF11224_low_2
[»] chr5 (5 HSPs)
chr5 (18-516)||(17854897-17855395)
chr5 (153-186)||(11257754-11257787)
chr5 (155-192)||(13996378-13996415)
chr5 (255-308)||(39994674-39994727)
chr5 (153-185)||(25019422-25019454)
[»] chr1 (1 HSPs)
chr1 (153-191)||(6025972-6026010)
[»] chr3 (3 HSPs)
chr3 (246-309)||(50402646-50402709)
chr3 (251-309)||(15802578-15802636)
chr3 (153-191)||(50251557-50251595)
[»] chr8 (1 HSPs)
chr8 (153-191)||(45371100-45371138)
[»] chr6 (2 HSPs)
chr6 (153-187)||(2732961-2732995)
chr6 (153-191)||(33735437-33735475)
[»] chr4 (1 HSPs)
chr4 (153-191)||(4762149-4762187)
[»] chr2 (1 HSPs)
chr2 (235-296)||(31246942-31247003)


Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 17855395 - 17854897
Alignment:
Q  18 tatgtctaactaataccacgcgatttgttaaaattctgctgccttacagcgctatagcgtcactatcaatgttatcaattgcggattgttaaaattccgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855395 tatgtctaactaataccacgcgatttgttaaaattctgctgccttacagcgctatagcgtcactatcaatgttatcaattgcggattgttaaaattccgc 17855296  T
Q  118 aattcaaaagtgctgtagtgccacatttagcaacatatttgacaacattttgtactaaaaagcatatcgcggaaaagcagcggttagtctacattccatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855295 aattcaaaagtgctgtagtgccacatttagcaacatatttgacaacattttgtactaaaaagcatatcgcggaaaagcagcggttagtctacattccatt 17855196  T
Q  218 ccacaacgctatagcggtataacaccgttataactgctatttgataacactttgtactatatcacatattgtggaacaatattgatttgttctatgagaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855195 ccacaacgctatagcggtataacaccgttataactgctatttgataacactttgtactatatcacatattgtggaacaatattgatttgttctatgagaa 17855096  T
Q  318 tcagatcattacaataacaaacagaaaataactttttcaaagaagaaacaattttacagagaagattgagaagaggatattatagaatcagcatttcctt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855095 tcagatcattacaataacaaacagaaaataactttttcaaagaagaaacaattttacagagaagattgagaagaggatattatagaatcagcatttcctt 17854996  T
Q  418 actacactgttctgtgatttccgcacatcttcgaggcgtagagatatgaacttggatagagagagttctttgatagggaaaacgtcgtgatctctgctc 516  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  17854995 actccactgttctgtgatttccgcacatcttcgaggcgtagagatataaacttggatagagagagttctttgatagggaaaacgtcatgatttctgctc 17854897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 11257787 - 11257754
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcg 186  Q
    |||||||||||||||||||||||| |||||||||    
T  11257787 tatttgacaacattttgtactaaatagcatatcg 11257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 13996378 - 13996415
Alignment:
Q  155 tttgacaacattttgtactaaaaagcatatcgcggaaa 192  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  13996378 tttgacaacattttgtactaaatagcgtatcgcggaaa 13996415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 39994727 - 39994674
Alignment:
Q  255 tatttgataacactttgtactatatcacatattgtggaacaatattgatttgtt 308  Q
    ||||||| |||||||||||||||||  |||||||| |||||||| || ||||||    
T  39994727 tatttgacaacactttgtactatattgcatattgttgaacaatagtggtttgtt 39994674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 25019422 - 25019454
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatc 185  Q
    ||||||| |||||||||||||||||||||||||    
T  25019422 tatttgaaaacattttgtactaaaaagcatatc 25019454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 6025972 - 6026010
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcgcggaa 191  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6025972 tatttgacaacattttgtactaaatagcatatcgcggaa 6026010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 50402646 - 50402709
Alignment:
Q  246 tataactgctatttgataacactttgtactatatcacatattgtggaacaatattgatttgttc 309  Q
    |||| ||||||||||| |||||||| ||||| ||  ||||||| ||||||||| ||||||||||    
T  50402646 tatagctgctatttgacaacactttatactaaatagcatattgcggaacaatagtgatttgttc 50402709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 15802636 - 15802578
Alignment:
Q  251 ctgctatttgataacactttgtactatatcacatattgtggaacaatattgatttgttc 309  Q
    ||||||||||| ||||||||||||||||| |||||| | |||| ||||  |||||||||    
T  15802636 ctgctatttgacaacactttgtactatataacatatcgcggaagaatagcgatttgttc 15802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 50251557 - 50251595
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcgcggaa 191  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  50251557 tatttgacaacattttctactaaatagcatatcgcggaa 50251595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 45371100 - 45371138
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcgcggaa 191  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  45371100 tatttgacaacattttgtactaaatagcatattgcggaa 45371138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 2732995 - 2732961
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcgc 187  Q
    |||||||||||||||||||||||| ||||||||||    
T  2732995 tatttgacaacattttgtactaaatagcatatcgc 2732961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 33735437 - 33735475
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcgcggaa 191  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  33735437 tatttgacaacattttgtactaaatagcatatcacggaa 33735475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 4762187 - 4762149
Alignment:
Q  153 tatttgacaacattttgtactaaaaagcatatcgcggaa 191  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  4762187 tatttgacaacattttgaactaaaaagcatattgcggaa 4762149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 31246942 - 31247003
Alignment:
Q  235 tataacaccgttataactgctatttgataacactttgtactatatcacatattgtggaacaa 296  Q
    |||||||| |||||||||||||||||| |||| |||| |||| ||  |||||| ||||||||    
T  31246942 tataacacggttataactgctatttgacaacattttgaactaaattgcatattttggaacaa 31247003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University